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BioLiP
Download all results in tab-seperated text for 78 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8hl1:AEFG (3.93) BS01 rna ? GO:0003746 ... P23112 37604686
    2 8hl1:AEFG (3.93) BS02 rna ? GO:0003746 ... P23112 37604686
    3 8hl1:AEFG (3.93) BS03 rna ? GO:0003746 ... P23112 37604686
    4 8hl1:AEFG (3.93) BS04 GNP ? GO:0003746 ... P23112 37604686
    5 8hl1:AL1P (3.93) BS01 rna ? GO:0000049 ... P35024 37604686
    6 8hl1:AL2P (3.93) BS01 rna ? GO:0002181 ... Q4JB43 37604686
    7 8hl1:AL3P (3.93) BS01 rna ? GO:0003723 ... Q4JB40 37604686
    8 8hl1:AL4P (3.93) BS01 rna ? GO:0003723 ... Q4JB41 37604686
    9 8hl1:AL5P (3.93) BS01 rna ? GO:0000049 ... P41202 37604686
    10 8hl1:AL5P (3.93) BS02 rna ? GO:0000049 ... P41202 37604686
    11 8hl1:AL6P (3.93) BS01 rna ? GO:0002181 ... O05637 37604686
    12 8hl1:ALX0 (3.93) BS01 rna ? GO:0003735 ... P38613 37604686
    13 8hl1:AS2P (3.93) BS01 rna ? GO:0003735 ... P39478 37604686
    14 8hl1:AS2P (3.93) BS02 UNK ? GO:0003735 ... P39478 37604686
    15 8hl1:AS3P (3.93) BS01 rna ? GO:0003676 ... Q4JB46 37604686
    16 8hl1:AS4E (3.93) BS01 rna ? GO:0003723 ... O05634 37604686
    17 8hl1:AS4P (3.93) BS01 rna ? GO:0003723 ... P39467 37604686
    18 8hl1:AS5P (3.93) BS01 rna ? GO:0003723 ... O05641 37604686
    19 8hl1:AS5P (3.93) BS02 UNK ? GO:0003723 ... O05641 37604686
    20 8hl1:AS6E (3.93) BS01 rna ? GO:0003735 ... Q4JAI1 37604686
    21 8hl1:AS7P (3.93) BS01 rna ? GO:0000028 ... P17198 37604686
    22 8hl1:AS8E (3.93) BS01 rna ? GO:0000462 ... Q4JAP5 37604686
    23 8hl1:AS8E (3.93) BS02 rna ? GO:0000462 ... Q4JAP5 37604686
    24 8hl1:AS8P (3.93) BS01 rna ? GO:0003735 ... O05636 37604686
    25 8hl1:AS9P (3.93) BS01 rna ? GO:0000462 ... P39468 37604686
    26 8hl1:L10E (3.93) BS01 rna ? GO:0000027 ... Q4JC84 37604686
    27 8hl1:L10E (3.93) BS02 rna ? GO:0000027 ... Q4JC84 37604686
    28 8hl1:L10E (3.93) BS03 rna ? GO:0000027 ... Q4JC84 37604686
    29 8hl1:L13P (3.93) BS01 rna ? GO:0003729 ... P39473 37604686
    30 8hl1:L141 (3.93) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    31 8hl1:L142 (3.93) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    32 8hl1:L14P (3.93) BS01 rna ? GO:0003735 ... Q4JB50 37604686
    33 8hl1:L15E (3.93) BS01 rna ? GO:0003735 ... Q4JB20 37604686
    34 8hl1:L15P (3.93) BS01 rna ? GO:0003735 ... O05643 37604686
    35 8hl1:L18E (3.93) BS01 rna ? GO:0003735 ... P39474 37604686
    36 8hl1:L18P (3.93) BS01 rna ? GO:0000027 ... O05640 37604686
    37 8hl1:L18P (3.93) BS02 rna ? GO:0000027 ... O05640 37604686
    38 8hl1:L19E (3.93) BS01 rna ? GO:0003723 ... O05639 37604686
    39 8hl1:L21E (3.93) BS01 rna ? GO:0003735 ... Q4JB11 37604686
    40 8hl1:L21E (3.93) BS02 rna ? GO:0003735 ... Q4JB11 37604686
    41 8hl1:L22P (3.93) BS01 rna ? GO:0002181 ... Q4JB45 37604686
    42 8hl1:L23P (3.93) BS01 rna ? GO:0000027 ... Q4JB42 37604686
    43 8hl1:L24E (3.93) BS01 rna ? GO:0003735 ... Q4JAV2 37604686
    44 8hl1:L24P (3.93) BS01 rna ? GO:0002181 ... O05633 37604686
    45 8hl1:L29P (3.93) BS01 rna ? GO:0003735 ... Q4JB47 37604686
    46 8hl1:L30E (3.93) BS01 rna ? GO:0003723 ... P11522 37604686
    47 8hl1:L30P (3.93) BS01 rna ? GO:0000463 ... O05642 37604686
    48 8hl1:L31E (3.93) BS01 rna ? GO:0003735 ... P38618 37604686
    49 8hl1:L32E (3.93) BS01 rna ? GO:0003735 ... O05638 37604686
    50 8hl1:L34E (3.93) BS01 rna ? GO:0003735 ... O05981 37604686
    51 8hl1:L37A (3.93) BS01 rna ? GO:0003735 ... Q4JB29 37604686
    52 8hl1:L37E (3.93) BS01 rna ? GO:0003735 ... Q4JAZ9 37604686
    53 8hl1:L39E (3.93) BS01 rna ? GO:0003735 ... P13005 37604686
    54 8hl1:L40E (3.93) BS01 rna ? GO:0003735 ... Q4JAP0 37604686
    55 8hl1:L44E (3.93) BS01 rna ? GO:0003735 ... Q4J9B2 37604686
    56 8hl1:L44E (3.93) BS02 rna ? GO:0003735 ... Q4J9B2 37604686
    57 8hl1:L45A (3.93) BS01 rna ? N/A Q4J9G6 37604686
    58 8hl1:L46A (3.93) BS01 rna ? N/A Q4J953 37604686
    59 8hl1:L47A (3.93) BS01 rna ? N/A F2Z6C4 37604686
    60 8hl1:L7A1 (3.93) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    61 8hl1:L7A2 (3.93) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    62 8hl1:S10P (3.93) BS01 rna ? GO:0000049 ... P17199 37604686
    63 8hl1:S11P (3.93) BS01 rna ? GO:0003735 ... P39469 37604686
    64 8hl1:S12P (3.93) BS01 rna ? GO:0003735 ... P11524 37604686
    65 8hl1:S13P (3.93) BS01 rna ? GO:0003676 ... P39470 37604686
    66 8hl1:S14P (3.93) BS01 rna ? GO:0003723 ... O05635 37604686
    67 8hl1:S15P (3.93) BS01 rna ? GO:0003735 ... Q4JAI3 37604686
    68 8hl1:S15P (3.93) BS02 rna ? GO:0003735 ... Q4JAI3 37604686
    69 8hl1:S17E (3.93) BS01 rna ? GO:0003735 ... Q4JAX5 37604686
    70 8hl1:S17P (3.93) BS01 rna ? GO:0003735 ... Q4JB49 37604686
    71 8hl1:S19E (3.93) BS01 rna ? GO:0000028 ... Q4J8U1 37604686
    72 8hl1:S19P (3.93) BS01 rna ? GO:0003723 ... Q4JB44 37604686
    73 8hl1:S24E (3.93) BS01 rna ? GO:0003735 ... Q4JAF9 37604686
    74 8hl1:S27A (3.93) BS01 rna ? GO:0003735 ... Q4JAG0 37604686
    75 8hl1:S27E (3.93) BS01 rna ? GO:0003735 ... Q4J9B1 37604686
    76 8hl1:S28E (3.93) BS01 rna ? GO:0003735 ... Q4JAV1 37604686
    77 8hl1:S3AE (3.93) BS01 rna ? GO:0003735 ... Q4JB17 37604686
    78 8hl1:SL7A (3.93) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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