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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 233 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8h2u:0 (3.4) BS01 CLA ? GO:0009416 ... Q05093 37270022
    2 8h2u:0 (3.4) BS02 CLA ? GO:0009416 ... Q05093 37270022
    3 8h2u:0 (3.4) BS03 CLA ? GO:0009416 ... Q05093 37270022
    4 8h2u:0 (3.4) BS04 CLA ? GO:0009416 ... Q05093 37270022
    5 8h2u:0 (3.4) BS05 CLA ? GO:0009416 ... Q05093 37270022
    6 8h2u:0 (3.4) BS06 CLA ? GO:0009416 ... Q05093 37270022
    7 8h2u:0 (3.4) BS07 CLA ? GO:0009416 ... Q05093 37270022
    8 8h2u:0 (3.4) BS08 CLA ? GO:0009416 ... Q05093 37270022
    9 8h2u:0 (3.4) BS09 CLA ? GO:0009416 ... Q05093 37270022
    10 8h2u:0 (3.4) BS10 CHL ? GO:0009416 ... Q05093 37270022
    11 8h2u:0 (3.4) BS11 CHL ? GO:0009416 ... Q05093 37270022
    12 8h2u:0 (3.4) BS12 CLA ? GO:0009416 ... Q05093 37270022
    13 8h2u:0 (3.4) BS13 CHL ? GO:0009416 ... Q05093 37270022
    14 8h2u:1 (3.4) BS01 CLA ? GO:0009416 ... Q05093 37270022
    15 8h2u:1 (3.4) BS02 CLA ? GO:0009416 ... Q05093 37270022
    16 8h2u:1 (3.4) BS03 CLA ? GO:0009416 ... Q05093 37270022
    17 8h2u:1 (3.4) BS04 CLA ? GO:0009416 ... Q05093 37270022
    18 8h2u:1 (3.4) BS05 CLA ? GO:0009416 ... Q05093 37270022
    19 8h2u:1 (3.4) BS06 CLA ? GO:0009416 ... Q05093 37270022
    20 8h2u:1 (3.4) BS07 CLA ? GO:0009416 ... Q05093 37270022
    21 8h2u:1 (3.4) BS08 CLA ? GO:0009416 ... Q05093 37270022
    22 8h2u:1 (3.4) BS09 CHL ? GO:0009416 ... Q05093 37270022
    23 8h2u:1 (3.4) BS10 CHL ? GO:0009416 ... Q05093 37270022
    24 8h2u:1 (3.4) BS11 CLA ? GO:0009416 ... Q05093 37270022
    25 8h2u:1 (3.4) BS12 CHL ? GO:0009416 ... Q05093 37270022
    26 8h2u:1 (3.4) BS13 CLA ? GO:0009416 ... Q05093 37270022
    27 8h2u:3 (3.4) BS01 CLA N/A GO:0009765 ... N/A 37270022
    28 8h2u:3 (3.4) BS02 CLA N/A GO:0009765 ... N/A 37270022
    29 8h2u:3 (3.4) BS03 CHL N/A GO:0009765 ... N/A 37270022
    30 8h2u:3 (3.4) BS04 CLA N/A GO:0009765 ... N/A 37270022
    31 8h2u:3 (3.4) BS05 CLA N/A GO:0009765 ... N/A 37270022
    32 8h2u:3 (3.4) BS06 CLA N/A GO:0009765 ... N/A 37270022
    33 8h2u:3 (3.4) BS07 CLA N/A GO:0009765 ... N/A 37270022
    34 8h2u:3 (3.4) BS08 CLA N/A GO:0009765 ... N/A 37270022
    35 8h2u:3 (3.4) BS09 CLA N/A GO:0009765 ... N/A 37270022
    36 8h2u:3 (3.4) BS10 CLA N/A GO:0009765 ... N/A 37270022
    37 8h2u:3 (3.4) BS11 CLA N/A GO:0009765 ... N/A 37270022
    38 8h2u:3 (3.4) BS12 CLA N/A GO:0009765 ... N/A 37270022
    39 8h2u:3 (3.4) BS13 CHL N/A GO:0009765 ... N/A 37270022
    40 8h2u:3 (3.4) BS14 CLA N/A GO:0009765 ... N/A 37270022
    41 8h2u:3 (3.4) BS15 CLA N/A GO:0009765 ... N/A 37270022
    42 8h2u:4 (3.4) BS01 CLA ? GO:0009416 ... Q75VZ0 37270022
    43 8h2u:4 (3.4) BS02 CLA ? GO:0009416 ... Q75VZ0 37270022
    44 8h2u:4 (3.4) BS03 CLA ? GO:0009416 ... Q75VZ0 37270022
    45 8h2u:4 (3.4) BS04 CLA ? GO:0009416 ... Q75VZ0 37270022
    46 8h2u:4 (3.4) BS05 CLA ? GO:0009416 ... Q75VZ0 37270022
    47 8h2u:4 (3.4) BS06 CLA ? GO:0009416 ... Q75VZ0 37270022
    48 8h2u:4 (3.4) BS07 CLA ? GO:0009416 ... Q75VZ0 37270022
    49 8h2u:4 (3.4) BS08 CLA ? GO:0009416 ... Q75VZ0 37270022
    50 8h2u:4 (3.4) BS09 CLA ? GO:0009416 ... Q75VZ0 37270022
    51 8h2u:4 (3.4) BS10 CHL ? GO:0009416 ... Q75VZ0 37270022
    52 8h2u:4 (3.4) BS11 CHL ? GO:0009416 ... Q75VZ0 37270022
    53 8h2u:4 (3.4) BS12 CLA ? GO:0009416 ... Q75VZ0 37270022
    54 8h2u:4 (3.4) BS13 CHL ? GO:0009416 ... Q75VZ0 37270022
    55 8h2u:4 (3.4) BS14 CHL ? GO:0009416 ... Q75VZ0 37270022
    56 8h2u:4 (3.4) BS15 CLA ? GO:0009416 ... Q75VZ0 37270022
    57 8h2u:5 (3.4) BS01 CLA ? GO:0009416 ... Q75VY8 37270022
    58 8h2u:5 (3.4) BS02 CLA ? GO:0009416 ... Q75VY8 37270022
    59 8h2u:5 (3.4) BS03 CLA ? GO:0009416 ... Q75VY8 37270022
    60 8h2u:5 (3.4) BS04 CLA ? GO:0009416 ... Q75VY8 37270022
    61 8h2u:5 (3.4) BS05 CLA ? GO:0009416 ... Q75VY8 37270022
    62 8h2u:5 (3.4) BS06 CLA ? GO:0009416 ... Q75VY8 37270022
    63 8h2u:5 (3.4) BS07 CLA ? GO:0009416 ... Q75VY8 37270022
    64 8h2u:5 (3.4) BS08 CLA ? GO:0009416 ... Q75VY8 37270022
    65 8h2u:5 (3.4) BS09 CLA ? GO:0009416 ... Q75VY8 37270022
    66 8h2u:5 (3.4) BS10 CLA ? GO:0009416 ... Q75VY8 37270022
    67 8h2u:5 (3.4) BS11 CLA ? GO:0009416 ... Q75VY8 37270022
    68 8h2u:5 (3.4) BS12 CHL ? GO:0009416 ... Q75VY8 37270022
    69 8h2u:5 (3.4) BS13 CHL ? GO:0009416 ... Q75VY8 37270022
    70 8h2u:5 (3.4) BS14 CLA ? GO:0009416 ... Q75VY8 37270022
    71 8h2u:5 (3.4) BS15 CHL ? GO:0009416 ... Q75VY8 37270022
    72 8h2u:5 (3.4) BS16 CHL ? GO:0009416 ... Q75VY8 37270022
    73 8h2u:5 (3.4) BS17 CLA ? GO:0009416 ... Q75VY8 37270022
    74 8h2u:5 (3.4) BS18 CLA ? GO:0009416 ... Q75VY8 37270022
    75 8h2u:6 (3.4) BS01 CLA ? GO:0009416 ... Q75VY6 37270022
    76 8h2u:6 (3.4) BS02 CLA ? GO:0009416 ... Q75VY6 37270022
    77 8h2u:6 (3.4) BS03 CLA ? GO:0009416 ... Q75VY6 37270022
    78 8h2u:6 (3.4) BS04 CLA ? GO:0009416 ... Q75VY6 37270022
    79 8h2u:6 (3.4) BS05 CLA ? GO:0009416 ... Q75VY6 37270022
    80 8h2u:6 (3.4) BS06 CLA ? GO:0009416 ... Q75VY6 37270022
    81 8h2u:6 (3.4) BS07 CLA ? GO:0009416 ... Q75VY6 37270022
    82 8h2u:6 (3.4) BS08 CLA ? GO:0009416 ... Q75VY6 37270022
    83 8h2u:6 (3.4) BS09 CLA ? GO:0009416 ... Q75VY6 37270022
    84 8h2u:6 (3.4) BS10 CHL ? GO:0009416 ... Q75VY6 37270022
    85 8h2u:6 (3.4) BS11 CHL ? GO:0009416 ... Q75VY6 37270022
    86 8h2u:6 (3.4) BS12 CLA ? GO:0009416 ... Q75VY6 37270022
    87 8h2u:6 (3.4) BS13 CHL ? GO:0009416 ... Q75VY6 37270022
    88 8h2u:6 (3.4) BS14 CHL ? GO:0009416 ... Q75VY6 37270022
    89 8h2u:6 (3.4) BS15 CLA ? GO:0009416 ... Q75VY6 37270022
    90 8h2u:6 (3.4) BS16 CLA ? GO:0009416 ... Q75VY6 37270022
    91 8h2u:6 (3.4) BS17 CLA ? GO:0009416 ... Q75VY6 37270022
    92 8h2u:7 (3.4) BS01 CLA ? GO:0009507 ... Q75VY4 37270022
    93 8h2u:7 (3.4) BS02 CLA ? GO:0009507 ... Q75VY4 37270022
    94 8h2u:7 (3.4) BS03 CLA ? GO:0009507 ... Q75VY4 37270022
    95 8h2u:7 (3.4) BS04 CLA ? GO:0009507 ... Q75VY4 37270022
    96 8h2u:7 (3.4) BS05 CLA ? GO:0009507 ... Q75VY4 37270022
    97 8h2u:7 (3.4) BS06 CLA ? GO:0009507 ... Q75VY4 37270022
    98 8h2u:7 (3.4) BS07 CLA ? GO:0009507 ... Q75VY4 37270022
    99 8h2u:7 (3.4) BS08 CLA ? GO:0009507 ... Q75VY4 37270022
    100 8h2u:7 (3.4) BS09 CHL ? GO:0009507 ... Q75VY4 37270022
    101 8h2u:7 (3.4) BS10 CHL ? GO:0009507 ... Q75VY4 37270022
    102 8h2u:7 (3.4) BS11 CLA ? GO:0009507 ... Q75VY4 37270022
    103 8h2u:7 (3.4) BS12 CHL ? GO:0009507 ... Q75VY4 37270022
    104 8h2u:7 (3.4) BS13 CHL ? GO:0009507 ... Q75VY4 37270022
    105 8h2u:8 (3.4) BS01 CLA ? GO:0009416 ... Q75VY7 37270022
    106 8h2u:8 (3.4) BS02 CLA ? GO:0009416 ... Q75VY7 37270022
    107 8h2u:8 (3.4) BS03 CLA ? GO:0009416 ... Q75VY7 37270022
    108 8h2u:8 (3.4) BS04 CLA ? GO:0009416 ... Q75VY7 37270022
    109 8h2u:8 (3.4) BS05 CLA ? GO:0009416 ... Q75VY7 37270022
    110 8h2u:8 (3.4) BS06 CLA ? GO:0009416 ... Q75VY7 37270022
    111 8h2u:8 (3.4) BS07 CLA ? GO:0009416 ... Q75VY7 37270022
    112 8h2u:8 (3.4) BS08 CLA ? GO:0009416 ... Q75VY7 37270022
    113 8h2u:8 (3.4) BS09 CLA ? GO:0009416 ... Q75VY7 37270022
    114 8h2u:8 (3.4) BS10 CHL ? GO:0009416 ... Q75VY7 37270022
    115 8h2u:8 (3.4) BS11 CHL ? GO:0009416 ... Q75VY7 37270022
    116 8h2u:8 (3.4) BS12 CLA ? GO:0009416 ... Q75VY7 37270022
    117 8h2u:8 (3.4) BS13 CHL ? GO:0009416 ... Q75VY7 37270022
    118 8h2u:A (3.4) BS01 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    119 8h2u:A (3.4) BS02 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    120 8h2u:A (3.4) BS03 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    121 8h2u:A (3.4) BS04 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    122 8h2u:A (3.4) BS05 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    123 8h2u:A (3.4) BS06 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    124 8h2u:A (3.4) BS07 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    125 8h2u:A (3.4) BS08 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    126 8h2u:A (3.4) BS09 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    127 8h2u:A (3.4) BS10 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    128 8h2u:A (3.4) BS11 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    129 8h2u:A (3.4) BS12 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    130 8h2u:A (3.4) BS13 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    131 8h2u:A (3.4) BS14 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    132 8h2u:A (3.4) BS15 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    133 8h2u:A (3.4) BS16 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    134 8h2u:A (3.4) BS17 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    135 8h2u:A (3.4) BS18 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    136 8h2u:A (3.4) BS19 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    137 8h2u:A (3.4) BS20 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    138 8h2u:A (3.4) BS21 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    139 8h2u:A (3.4) BS22 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    140 8h2u:A (3.4) BS23 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    141 8h2u:A (3.4) BS24 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    142 8h2u:A (3.4) BS25 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    143 8h2u:A (3.4) BS26 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    144 8h2u:A (3.4) BS27 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    145 8h2u:A (3.4) BS28 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    146 8h2u:A (3.4) BS29 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    147 8h2u:A (3.4) BS30 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    148 8h2u:A (3.4) BS31 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    149 8h2u:A (3.4) BS32 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    150 8h2u:A (3.4) BS33 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    151 8h2u:A (3.4) BS34 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    152 8h2u:A (3.4) BS35 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    153 8h2u:A (3.4) BS36 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    154 8h2u:A (3.4) BS37 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    155 8h2u:A (3.4) BS38 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    156 8h2u:A (3.4) BS39 SF4 1.97.1.12 GO:0000287 ... P12154 37270022
    157 8h2u:A (3.4) BS40 PQN 1.97.1.12 GO:0000287 ... P12154 37270022
    158 8h2u:A (3.4) BS41 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    159 8h2u:A (3.4) BS42 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    160 8h2u:A (3.4) BS43 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    161 8h2u:A (3.4) BS44 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    162 8h2u:A (3.4) BS45 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    163 8h2u:A (3.4) BS46 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    164 8h2u:B (3.4) BS01 peptide 1.97.1.12 GO:0000287 ... P09144 37270022
    165 8h2u:B (3.4) BS02 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    166 8h2u:B (3.4) BS03 SF4 1.97.1.12 GO:0000287 ... P09144 37270022
    167 8h2u:B (3.4) BS04 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    168 8h2u:B (3.4) BS05 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    169 8h2u:B (3.4) BS06 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    170 8h2u:B (3.4) BS07 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    171 8h2u:B (3.4) BS08 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    172 8h2u:B (3.4) BS09 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    173 8h2u:B (3.4) BS10 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    174 8h2u:B (3.4) BS11 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    175 8h2u:B (3.4) BS12 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    176 8h2u:B (3.4) BS13 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    177 8h2u:B (3.4) BS14 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    178 8h2u:B (3.4) BS15 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    179 8h2u:B (3.4) BS16 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    180 8h2u:B (3.4) BS17 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    181 8h2u:B (3.4) BS18 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    182 8h2u:B (3.4) BS19 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    183 8h2u:B (3.4) BS20 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    184 8h2u:B (3.4) BS21 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    185 8h2u:B (3.4) BS22 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    186 8h2u:B (3.4) BS23 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    187 8h2u:B (3.4) BS24 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    188 8h2u:B (3.4) BS25 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    189 8h2u:B (3.4) BS26 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    190 8h2u:B (3.4) BS27 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    191 8h2u:B (3.4) BS28 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    192 8h2u:B (3.4) BS29 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    193 8h2u:B (3.4) BS30 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    194 8h2u:B (3.4) BS31 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    195 8h2u:B (3.4) BS32 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    196 8h2u:B (3.4) BS33 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    197 8h2u:B (3.4) BS34 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    198 8h2u:B (3.4) BS35 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    199 8h2u:B (3.4) BS36 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    200 8h2u:B (3.4) BS37 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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