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BioLiP
Download all results in tab-seperated text for 135 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8g5z:5A (2.64) BS01 rna N/A GO:0003723 ... N/A 37020024
    2 8g5z:5A (2.64) BS02 rna N/A GO:0003723 ... N/A 37020024
    3 8g5z:EF (2.64) BS01 rna 3.6.5.- GO:0000049 ... P68105 37020024
    4 8g5z:EF (2.64) BS02 rna 3.6.5.- GO:0000049 ... P68105 37020024
    5 8g5z:EF (2.64) BS03 rna 3.6.5.- GO:0000049 ... P68105 37020024
    6 8g5z:EF (2.64) BS04 PHE 3.6.5.- GO:0000049 ... P68105 37020024
    7 8g5z:EF (2.64) BS05 GSP 3.6.5.- GO:0000049 ... P68105 37020024
    8 8g5z:EF (2.64) BS06 ZIY 3.6.5.- GO:0000049 ... P68105 37020024
    9 8g5z:EF (2.64) BS07 MG 3.6.5.- GO:0000049 ... P68105 37020024
    10 8g5z:EF (2.64) BS08 MG 3.6.5.- GO:0000049 ... P68105 37020024
    11 8g5z:LA (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    12 8g5z:LA (2.64) BS02 rna N/A GO:0003735 ... N/A 37020024
    13 8g5z:LA (2.64) BS03 MG N/A GO:0003735 ... N/A 37020024
    14 8g5z:LB (2.64) BS01 rna ? GO:0002181 ... P39023 37020024
    15 8g5z:LC (2.64) BS01 rna ? GO:0003735 ... P36578 37020024
    16 8g5z:LC (2.64) BS02 rna ? GO:0003735 ... P36578 37020024
    17 8g5z:LD (2.64) BS01 rna ? GO:0000027 ... P46777 37020024
    18 8g5z:LD (2.64) BS02 rna ? GO:0000027 ... P46777 37020024
    19 8g5z:LE (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    20 8g5z:LF (2.64) BS01 rna ? GO:0000463 ... P18124 37020024
    21 8g5z:LF (2.64) BS02 rna ? GO:0000463 ... P18124 37020024
    22 8g5z:LG (2.64) BS01 rna ? GO:0000470 ... P62424 37020024
    23 8g5z:LG (2.64) BS02 rna ? GO:0000470 ... P62424 37020024
    24 8g5z:LH (2.64) BS01 rna ? GO:0002181 ... P32969 37020024
    25 8g5z:LH (2.64) BS02 MG ? GO:0002181 ... P32969 37020024
    26 8g5z:LI (2.64) BS01 rna ? GO:0000027 ... P27635 37020024
    27 8g5z:LI (2.64) BS02 rna ? GO:0000027 ... P27635 37020024
    28 8g5z:LI (2.64) BS03 MG ? GO:0000027 ... P27635 37020024
    29 8g5z:LJ (2.64) BS01 rna ? GO:0000027 ... P62913 37020024
    30 8g5z:LJ (2.64) BS02 rna ? GO:0000027 ... P62913 37020024
    31 8g5z:LJ (2.64) BS03 rna ? GO:0000027 ... P62913 37020024
    32 8g5z:LK (2.64) BS01 rna ? GO:0003735 ... P30050 37020024
    33 8g5z:LL (2.64) BS01 rna ? GO:0001824 ... P26373 37020024
    34 8g5z:LL (2.64) BS02 rna ? GO:0001824 ... P26373 37020024
    35 8g5z:LM (2.64) BS01 rna ? GO:0003723 ... P50914 37020024
    36 8g5z:LN (2.64) BS01 rna ? GO:0002181 ... P61313 37020024
    37 8g5z:LN (2.64) BS02 rna ? GO:0002181 ... P61313 37020024
    38 8g5z:LN (2.64) BS03 MG ? GO:0002181 ... P61313 37020024
    39 8g5z:LO (2.64) BS01 rna ? GO:0002181 ... P40429 37020024
    40 8g5z:LP (2.64) BS01 rna ? GO:0003735 ... P18621 37020024
    41 8g5z:LP (2.64) BS02 rna ? GO:0003735 ... P18621 37020024
    42 8g5z:LQ (2.64) BS01 rna ? GO:0002181 ... Q07020 37020024
    43 8g5z:LR (2.64) BS01 rna ? GO:0002181 ... P84098 37020024
    44 8g5z:LR (2.64) BS02 rna ? GO:0002181 ... P84098 37020024
    45 8g5z:LS (2.64) BS01 rna ? GO:0002181 ... Q02543 37020024
    46 8g5z:LS (2.64) BS02 rna ? GO:0002181 ... Q02543 37020024
    47 8g5z:LT (2.64) BS01 rna ? GO:0002181 ... P46778 37020024
    48 8g5z:LT (2.64) BS02 rna ? GO:0002181 ... P46778 37020024
    49 8g5z:LU (2.64) BS01 rna ? GO:0003735 ... P35268 37020024
    50 8g5z:LV (2.64) BS01 rna ? GO:0000122 ... P62829 37020024
    51 8g5z:LW (2.64) BS01 rna N/A N/A N/A 37020024
    52 8g5z:LW (2.64) BS02 rna N/A N/A N/A 37020024
    53 8g5z:LX (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    54 8g5z:LX (2.64) BS02 rna N/A GO:0003735 ... N/A 37020024
    55 8g5z:LY (2.64) BS01 rna ? GO:0002181 ... P61254 37020024
    56 8g5z:LY (2.64) BS02 rna ? GO:0002181 ... P61254 37020024
    57 8g5z:LZ (2.64) BS01 rna ? GO:0002181 ... P61353 37020024
    58 8g5z:La (2.64) BS01 rna ? GO:0002181 ... P46776 37020024
    59 8g5z:Lb (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    60 8g5z:Lc (2.64) BS01 rna ? GO:0003723 ... P62888 37020024
    61 8g5z:Ld (2.64) BS01 rna ? GO:0003735 ... P62899 37020024
    62 8g5z:Le (2.64) BS01 rna ? GO:0002181 ... P62910 37020024
    63 8g5z:Le (2.64) BS02 MG ? GO:0002181 ... P62910 37020024
    64 8g5z:Lf (2.64) BS01 rna ? GO:0000049 ... P18077 37020024
    65 8g5z:Lg (2.64) BS01 rna ? GO:0002181 ... P49207 37020024
    66 8g5z:Lg (2.64) BS02 ZN ? GO:0002181 ... P49207 37020024
    67 8g5z:Lg (2.64) BS03 MG ? GO:0002181 ... P49207 37020024
    68 8g5z:Lh (2.64) BS01 rna ? GO:0000463 ... P42766 37020024
    69 8g5z:Lh (2.64) BS02 rna ? GO:0000463 ... P42766 37020024
    70 8g5z:Li (2.64) BS01 rna ? GO:0002181 ... Q9Y3U8 37020024
    71 8g5z:Lj (2.64) BS01 rna ? GO:0003735 ... P61927 37020024
    72 8g5z:Lj (2.64) BS02 rna ? GO:0003735 ... P61927 37020024
    73 8g5z:Lj (2.64) BS03 ZN ? GO:0003735 ... P61927 37020024
    74 8g5z:Lk (2.64) BS01 rna ? GO:0001501 ... P63173 37020024
    75 8g5z:Ll (2.64) BS01 rna ? GO:0002181 ... P62891 37020024
    76 8g5z:Ll (2.64) BS02 rna ? GO:0002181 ... P62891 37020024
    77 8g5z:Lm (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    78 8g5z:Lm (2.64) BS02 ZN N/A GO:0003735 ... N/A 37020024
    79 8g5z:Lo (2.64) BS01 rna ? GO:0003735 ... J3KQN4 37020024
    80 8g5z:Lo (2.64) BS02 rna ? GO:0003735 ... J3KQN4 37020024
    81 8g5z:Lo (2.64) BS03 3H3 ? GO:0003735 ... J3KQN4 37020024
    82 8g5z:Lo (2.64) BS04 ZN ? GO:0003735 ... J3KQN4 37020024
    83 8g5z:Lp (2.64) BS01 rna ? GO:0002181 ... P61513 37020024
    84 8g5z:Lp (2.64) BS02 ZN ? GO:0002181 ... P61513 37020024
    85 8g5z:Lq (2.64) BS01 rna ? N/A P05388 37020024
    86 8g5z:Lr (2.64) BS01 rna ? GO:0002181 ... P46779 37020024
    87 8g5z:Lz (2.64) BS01 rna N/A GO:0003723 ... N/A 37020024
    88 8g5z:SA (2.64) BS01 rna ? GO:0003735 ... P08865 37020024
    89 8g5z:SB (2.64) BS01 rna ? GO:0003735 ... P61247 37020024
    90 8g5z:SB (2.64) BS02 rna ? GO:0003735 ... P61247 37020024
    91 8g5z:SC (2.64) BS01 rna ? GO:0003723 ... P15880 37020024
    92 8g5z:SD (2.64) BS01 rna 4.2.99.18 GO:0000977 ... P23396 37020024
    93 8g5z:SE (2.64) BS01 rna N/A GO:0003723 ... N/A 37020024
    94 8g5z:SF (2.64) BS01 rna ? GO:0000028 ... P46782 37020024
    95 8g5z:SF (2.64) BS02 MG ? GO:0000028 ... P46782 37020024
    96 8g5z:SG (2.64) BS01 rna ? GO:0000082 ... P62753 37020024
    97 8g5z:SH (2.64) BS01 rna ? GO:0001843 ... P62081 37020024
    98 8g5z:SI (2.64) BS01 rna ? GO:0000462 ... P62241 37020024
    99 8g5z:SI (2.64) BS02 rna ? GO:0000462 ... P62241 37020024
    100 8g5z:SJ (2.64) BS01 rna ? GO:0002181 ... P46781 37020024
    101 8g5z:SK (2.64) BS01 rna N/A N/A N/A 37020024
    102 8g5z:SL (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    103 8g5z:SM (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    104 8g5z:SN (2.64) BS01 rna ? GO:0002181 ... P62277 37020024
    105 8g5z:SN (2.64) BS02 rna ? GO:0002181 ... P62277 37020024
    106 8g5z:SO (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    107 8g5z:SO (2.64) BS02 MG N/A GO:0003735 ... N/A 37020024
    108 8g5z:SP (2.64) BS01 rna N/A GO:0003723 ... N/A 37020024
    109 8g5z:SP (2.64) BS02 rna N/A GO:0003723 ... N/A 37020024
    110 8g5z:SQ (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    111 8g5z:SR (2.64) BS01 rna ? GO:0002181 ... P08708 37020024
    112 8g5z:SS (2.64) BS01 rna N/A GO:0003676 ... N/A 37020024
    113 8g5z:SS (2.64) BS02 rna N/A GO:0003676 ... N/A 37020024
    114 8g5z:SS (2.64) BS03 rna N/A GO:0003676 ... N/A 37020024
    115 8g5z:ST (2.64) BS01 rna ? GO:0000028 ... P39019 37020024
    116 8g5z:SU (2.64) BS01 rna N/A GO:0003723 ... N/A 37020024
    117 8g5z:SW (2.64) BS01 rna ? GO:0002181 ... P62244 37020024
    118 8g5z:SX (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    119 8g5z:SX (2.64) BS02 rna N/A GO:0003735 ... N/A 37020024
    120 8g5z:SX (2.64) BS03 MG N/A GO:0003735 ... N/A 37020024
    121 8g5z:SY (2.64) BS01 rna ? GO:0002181 ... P62847 37020024
    122 8g5z:SZ (2.64) BS01 rna N/A N/A N/A 37020024
    123 8g5z:SZ (2.64) BS02 rna N/A N/A N/A 37020024
    124 8g5z:Sa (2.64) BS01 rna ? GO:0003735 ... P62854 37020024
    125 8g5z:Sa (2.64) BS02 ZN ? GO:0003735 ... P62854 37020024
    126 8g5z:Sb (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    127 8g5z:Sc (2.64) BS01 rna ? GO:0000028 ... P62857 37020024
    128 8g5z:Sd (2.64) BS01 rna ? GO:0002181 ... P62273 37020024
    129 8g5z:Sd (2.64) BS02 ZN ? GO:0002181 ... P62273 37020024
    130 8g5z:Sd (2.64) BS03 MG ? GO:0002181 ... P62273 37020024
    131 8g5z:Se (2.64) BS01 rna ? GO:0003735 ... P62861 37020024
    132 8g5z:Se (2.64) BS02 rna ? GO:0003735 ... P62861 37020024
    133 8g5z:Sf (2.64) BS01 rna N/A GO:0003735 ... N/A 37020024
    134 8g5z:Sf (2.64) BS02 ZN N/A GO:0003735 ... N/A 37020024
    135 8g5z:Sg (2.64) BS01 rna ? GO:0001891 ... P63244 37020024
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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