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BioLiP
Download all results in tab-seperated text for 32 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8g4s:A (3.14) BS01 rna ? GO:0000028 ... A8BE86 38242118
    2 8g4s:B (3.14) BS01 rna ? GO:0003735 ... A8BS79 38242118
    3 8g4s:C (3.14) BS01 rna ? GO:0003723 ... A8BMZ1 38242118
    4 8g4s:D (3.14) BS01 rna ? GO:0003723 ... A8B8Z2 38242118
    5 8g4s:E (3.14) BS01 rna ? GO:0003723 ... A8BFE3 38242118
    6 8g4s:F (3.14) BS01 rna ? GO:0000028 ... V6T8P6 38242118
    7 8g4s:G (3.14) BS01 rna ? GO:0003735 ... A8B6L8 38242118
    8 8g4s:H (3.14) BS01 rna ? GO:0003735 ... V6TBA3 38242118
    9 8g4s:I (3.14) BS01 rna ? GO:0000462 ... A8B252 38242118
    10 8g4s:J (3.14) BS01 rna ? GO:0003723 ... A8BKS8 38242118
    11 8g4s:K (3.14) BS01 rna ? GO:0003723 ... A8BRX3 38242118
    12 8g4s:L (3.14) BS01 rna ? GO:0003735 ... V6TF82 38242118
    13 8g4s:M (3.14) BS01 rna ? GO:0003735 ... A8BUG8 38242118
    14 8g4s:N (3.14) BS01 rna ? GO:0003735 ... A8BE02 38242118
    15 8g4s:O (3.14) BS01 rna ? GO:0000028 ... E2RU83 38242118
    16 8g4s:P (3.14) BS01 rna ? GO:0000028 ... A8BBP3 38242118
    17 8g4s:Q (3.14) BS01 rna ? GO:0000462 ... A8BKC6 38242118
    18 8g4s:R (3.14) BS01 rna ? GO:0003735 ... A8BRG5 38242118
    19 8g4s:S (3.14) BS01 rna ? GO:0003676 ... A8BZ58 38242118
    20 8g4s:T (3.14) BS01 rna ? GO:0000028 ... V6TE85 38242118
    21 8g4s:U (3.14) BS01 rna ? GO:0003735 ... A8B4G0 38242118
    22 8g4s:W (3.14) BS01 rna ? GO:0003735 ... V6TFI0 38242118
    23 8g4s:X (3.14) BS01 rna ? GO:0003735 ... V6T9I6 38242118
    24 8g4s:Y (3.14) BS01 rna ? GO:0003735 ... A8B593 38242118
    25 8g4s:Z (3.14) BS01 rna ? GO:0003735 ... A8B8H7 38242118
    26 8g4s:a (3.14) BS01 rna ? GO:0003729 ... A8BQZ7 38242118
    27 8g4s:a (3.14) BS02 ZN ? GO:0003729 ... A8BQZ7 38242118
    28 8g4s:b (3.14) BS01 rna ? GO:0003735 ... A8BJL1 38242118
    29 8g4s:c (3.14) BS01 rna ? GO:0000028 ... A8B4F3 38242118
    30 8g4s:d (3.14) BS01 rna ? GO:0003735 ... A8B7H6 38242118
    31 8g4s:e (3.14) BS01 rna ? GO:0003735 ... A0A644F843 38242118
    32 8g4s:f (3.14) BS01 rna ? GO:0003735 ... A8BNY1 38242118
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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