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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 382 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8g2z:AA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    2 8g2z:AB (4.1) BS01 GTP ? GO:0000226 ... P41352 37061538
    3 8g2z:AB (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    4 8g2z:AC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    5 8g2z:AD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    6 8g2z:AE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    7 8g2z:AF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    8 8g2z:AG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    9 8g2z:AG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    10 8g2z:AH (4.1) BS01 GTP ? GO:0000226 ... P41352 37061538
    11 8g2z:AH (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    12 8g2z:AI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    13 8g2z:AJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    14 8g2z:AK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    15 8g2z:AL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    16 8g2z:AM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    17 8g2z:AN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    18 8g2z:BA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    19 8g2z:BB (4.1) BS01 GTP ? GO:0000226 ... P41352 37061538
    20 8g2z:BB (4.1) BS02 MG ? GO:0000226 ... P41352 37061538
    21 8g2z:BB (4.1) BS03 GDP ? GO:0000226 ... P41352 37061538
    22 8g2z:BC (4.1) BS01 MG 3.6.5.- GO:0000226 ... P41351 37061538
    23 8g2z:BC (4.1) BS02 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    24 8g2z:BD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    25 8g2z:BE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    26 8g2z:BE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    27 8g2z:BF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    28 8g2z:BG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    29 8g2z:BH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    30 8g2z:BI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    31 8g2z:BJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    32 8g2z:BK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    33 8g2z:BL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    34 8g2z:BM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    35 8g2z:BN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    36 8g2z:CA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    37 8g2z:CB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    38 8g2z:CC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    39 8g2z:CD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    40 8g2z:CE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    41 8g2z:CE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    42 8g2z:CF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    43 8g2z:CG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    44 8g2z:CG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    45 8g2z:CH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    46 8g2z:CI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    47 8g2z:CI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    48 8g2z:CJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    49 8g2z:CK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    50 8g2z:CL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    51 8g2z:CM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    52 8g2z:CN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    53 8g2z:DA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    54 8g2z:DA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    55 8g2z:DB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    56 8g2z:DC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    57 8g2z:DD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    58 8g2z:DE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    59 8g2z:DE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    60 8g2z:DF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    61 8g2z:DG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    62 8g2z:DH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    63 8g2z:DI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    64 8g2z:DI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    65 8g2z:DJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    66 8g2z:DK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    67 8g2z:DL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    68 8g2z:DM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    69 8g2z:DM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    70 8g2z:DN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    71 8g2z:EA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    72 8g2z:EB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    73 8g2z:EC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    74 8g2z:ED (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    75 8g2z:EE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    76 8g2z:EF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    77 8g2z:EG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    78 8g2z:EH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    79 8g2z:EI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    80 8g2z:EJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    81 8g2z:EK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    82 8g2z:EK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    83 8g2z:EL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    84 8g2z:EM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    85 8g2z:EN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    86 8g2z:FA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    87 8g2z:FB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    88 8g2z:FC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    89 8g2z:FD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    90 8g2z:FE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    91 8g2z:FF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    92 8g2z:FG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    93 8g2z:FH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    94 8g2z:FI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    95 8g2z:FJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    96 8g2z:FK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    97 8g2z:FL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    98 8g2z:FM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    99 8g2z:FN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    100 8g2z:GA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    101 8g2z:GB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    102 8g2z:GC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    103 8g2z:GD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    104 8g2z:GE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    105 8g2z:GF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    106 8g2z:GG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    107 8g2z:GH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    108 8g2z:GI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    109 8g2z:GJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    110 8g2z:GK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    111 8g2z:GL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    112 8g2z:GM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    113 8g2z:GN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    114 8g2z:HA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    115 8g2z:HB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    116 8g2z:HC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    117 8g2z:HD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    118 8g2z:HE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    119 8g2z:HF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    120 8g2z:HG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    121 8g2z:HH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    122 8g2z:HI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    123 8g2z:HJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    124 8g2z:HK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    125 8g2z:HL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    126 8g2z:HM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    127 8g2z:HN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    128 8g2z:IA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    129 8g2z:IA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    130 8g2z:IB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    131 8g2z:IC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    132 8g2z:ID (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    133 8g2z:IE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    134 8g2z:IE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    135 8g2z:IF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    136 8g2z:IG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    137 8g2z:IG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    138 8g2z:IH (4.1) BS01 GTP ? GO:0000226 ... P41352 37061538
    139 8g2z:IH (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    140 8g2z:II (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    141 8g2z:IJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    142 8g2z:IK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    143 8g2z:IL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    144 8g2z:IM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    145 8g2z:IM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    146 8g2z:IN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    147 8g2z:JA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    148 8g2z:JB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    149 8g2z:JC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    150 8g2z:JC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    151 8g2z:JD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    152 8g2z:JE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    153 8g2z:JF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    154 8g2z:JG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    155 8g2z:JG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    156 8g2z:JH (4.1) BS01 GTP ? GO:0000226 ... P41352 37061538
    157 8g2z:JH (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    158 8g2z:JI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    159 8g2z:JI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    160 8g2z:JJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    161 8g2z:JK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    162 8g2z:JK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    163 8g2z:JL (4.1) BS01 GTP ? GO:0000226 ... P41352 37061538
    164 8g2z:JL (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    165 8g2z:JM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    166 8g2z:JN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    167 8g2z:KA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    168 8g2z:KB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    169 8g2z:KC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    170 8g2z:KD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    171 8g2z:KE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    172 8g2z:KE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    173 8g2z:KF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    174 8g2z:KG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    175 8g2z:KH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    176 8g2z:KI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    177 8g2z:KJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    178 8g2z:KK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    179 8g2z:KL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    180 8g2z:KM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    181 8g2z:KN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    182 8g2z:LA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    183 8g2z:LB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    184 8g2z:LC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    185 8g2z:LD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    186 8g2z:LE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    187 8g2z:LF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    188 8g2z:LG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    189 8g2z:LH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    190 8g2z:LI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    191 8g2z:LJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    192 8g2z:LK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    193 8g2z:LL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    194 8g2z:LM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    195 8g2z:LN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    196 8g2z:MA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    197 8g2z:MB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    198 8g2z:MC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    199 8g2z:MD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    200 8g2z:ME (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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