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BioLiP
Download all results in tab-seperated text for 67 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8fzh:1 (2.9) BS01 rna N/A N/A N/A 39030416
    2 8fzh:2 (2.9) BS01 rna N/A N/A N/A 39030416
    3 8fzh:3 (2.9) BS01 rna N/A GO:0002181 ... P0A7M9 39030416
    4 8fzh:3 (2.9) BS02 ZN N/A GO:0002181 ... P0A7M9 39030416
    5 8fzh:4 (2.9) BS01 rna N/A N/A N/A 39030416
    6 8fzh:5 (2.9) BS01 rna N/A N/A N/A 39030416
    7 8fzh:6 (2.9) BS01 rna N/A GO:0005840 ... B7MGC4 39030416
    8 8fzh:7 (2.9) BS01 rna N/A GO:0002181 ... P0A7Q1 39030416
    9 8fzh:8 (2.9) BS01 rna N/A GO:0005737 ... A0A0E2L017 39030416
    10 8fzh:8 (2.9) BS02 ZN N/A GO:0005737 ... A0A0E2L017 39030416
    11 8fzh:C (2.9) BS01 rna N/A GO:0000027 ... P60422 39030416
    12 8fzh:C (2.9) BS02 MG N/A GO:0000027 ... P60422 39030416
    13 8fzh:D (2.9) BS01 rna N/A N/A N/A 39030416
    14 8fzh:E (2.9) BS01 rna N/A GO:0003735 ... A1AGK6 39030416
    15 8fzh:F (2.9) BS01 rna N/A GO:0000049 ... A0A140N5A3 39030416
    16 8fzh:F (2.9) BS02 rna N/A GO:0000049 ... A0A140N5A3 39030416
    17 8fzh:F (2.9) BS03 rna N/A GO:0000049 ... A0A140N5A3 39030416
    18 8fzh:G (2.9) BS01 rna N/A GO:0002181 ... C3SR17 39030416
    19 8fzh:H (2.9) BS01 rna N/A N/A N/A 39030416
    20 8fzh:I (2.9) BS01 rna N/A GO:0002181 ... P0A7J3 39030416
    21 8fzh:J (2.9) BS01 rna N/A GO:0000027 ... P0A7J7 39030416
    22 8fzh:L (2.9) BS01 rna N/A N/A N/A 39030416
    23 8fzh:M (2.9) BS01 rna N/A GO:0003735 ... S1NW45 39030416
    24 8fzh:N (2.9) BS01 rna N/A GO:0003735 ... S5NDE9 39030416
    25 8fzh:O (2.9) BS01 rna N/A N/A N/A 39030416
    26 8fzh:P (2.9) BS01 rna N/A N/A N/A 39030416
    27 8fzh:Q (2.9) BS01 rna N/A N/A N/A 39030416
    28 8fzh:Q (2.9) BS02 rna N/A N/A N/A 39030416
    29 8fzh:R (2.9) BS01 rna N/A N/A N/A 39030416
    30 8fzh:R (2.9) BS02 rna N/A N/A N/A 39030416
    31 8fzh:S (2.9) BS01 rna N/A GO:0000027 ... B7MAS6 39030416
    32 8fzh:T (2.9) BS01 rna N/A GO:0003735 ... C3SSG2 39030416
    33 8fzh:U (2.9) BS01 rna N/A GO:0002181 ... P61175 39030416
    34 8fzh:V (2.9) BS01 rna N/A N/A N/A 39030416
    35 8fzh:W (2.9) BS01 rna N/A N/A N/A 39030416
    36 8fzh:X (2.9) BS01 rna N/A N/A N/A 39030416
    37 8fzh:Y (2.9) BS01 rna N/A GO:0000027 ... P0A7L8 39030416
    38 8fzh:Y (2.9) BS02 rna N/A GO:0000027 ... P0A7L8 39030416
    39 8fzh:Z (2.9) BS01 rna N/A GO:0003735 ... A0A1X3JA73 39030416
    40 8fzh:b (2.9) BS01 rna N/A GO:0000028 ... J7QM75 39030416
    41 8fzh:c (2.9) BS01 rna N/A GO:0003729 ... B7MCS9 39030416
    42 8fzh:d (2.9) BS01 rna N/A GO:0000028 ... P0A7V8 39030416
    43 8fzh:e (2.9) BS01 rna N/A GO:0000028 ... P0A7W1 39030416
    44 8fzh:f (2.9) BS01 rna N/A GO:0000028 ... C3SFQ7 39030416
    45 8fzh:g (2.9) BS01 rna N/A N/A P02359 39030416
    46 8fzh:g (2.9) BS02 rna N/A N/A P02359 39030416
    47 8fzh:h (2.9) BS01 rna N/A N/A N/A 39030416
    48 8fzh:i (2.9) BS01 rna N/A N/A N/A 39030416
    49 8fzh:i (2.9) BS02 rna N/A N/A N/A 39030416
    50 8fzh:j (2.9) BS01 rna N/A N/A N/A 39030416
    51 8fzh:k (2.9) BS01 rna N/A GO:0005840 ... A0A0H3PWX2 39030416
    52 8fzh:l (2.9) BS01 rna N/A GO:0000049 ... A0A0F1AUC4 39030416
    53 8fzh:m (2.9) BS01 rna N/A GO:0000049 ... A0A7U9IV78 39030416
    54 8fzh:m (2.9) BS02 rna N/A GO:0000049 ... A0A7U9IV78 39030416
    55 8fzh:n (2.9) BS01 rna N/A N/A N/A 39030416
    56 8fzh:o (2.9) BS01 rna N/A N/A N/A 39030416
    57 8fzh:o (2.9) BS02 rna N/A N/A N/A 39030416
    58 8fzh:p (2.9) BS01 rna N/A GO:0000028 ... C3SYP2 39030416
    59 8fzh:q (2.9) BS01 rna N/A N/A N/A 39030416
    60 8fzh:r (2.9) BS01 rna N/A GO:0003735 ... A0A0E2KXL3 39030416
    61 8fzh:s (2.9) BS01 rna N/A N/A N/A 39030416
    62 8fzh:t (2.9) BS01 rna N/A GO:0000028 ... C3TRH7 39030416
    63 8fzh:u (2.9) BS01 rna N/A GO:0005840 ... A0A0E2L2J1 39030416
    64 8fzh:w (2.9) BS01 rna N/A GO:0005737 ... C3TCZ2 39030416
    65 8fzh:w (2.9) BS02 rna N/A GO:0005737 ... C3TCZ2 39030416
    66 8fzh:w (2.9) BS03 rna N/A GO:0005737 ... C3TCZ2 39030416
    67 8fzh:w (2.9) BS04 rna N/A GO:0005737 ... C3TCZ2 39030416
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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