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BioLiP
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8fto:0 (1.85) BS01 rna ? GO:0000027 ... P0A7N9 37419664
    2 8fto:1 (1.85) BS01 rna ? GO:0002181 ... P0A7P5 37419664
    3 8fto:2 (1.85) BS01 rna ? GO:0002181 ... P0A7Q1 37419664
    4 8fto:3 (1.85) BS01 rna ? GO:0002181 ... P0A7Q6 37419664
    5 8fto:4 (1.85) BS01 rna ? GO:0002181 ... P0A7M9 37419664
    6 8fto:4 (1.85) BS02 rna ? GO:0002181 ... P0A7M9 37419664
    7 8fto:B (1.85) BS01 rna ? GO:0000028 ... P0A7V0 37419664
    8 8fto:C (1.85) BS01 rna ? GO:0000028 ... P0A7V3 37419664
    9 8fto:D (1.85) BS01 rna ? GO:0000028 ... P0A7V8 37419664
    10 8fto:E (1.85) BS01 rna ? GO:0000028 ... P0A7W1 37419664
    11 8fto:F (1.85) BS01 rna ? GO:0002181 ... P02358 37419664
    12 8fto:G (1.85) BS01 rna ? GO:0000028 ... P02359 37419664
    13 8fto:H (1.85) BS01 rna ? GO:0000028 ... P0A7W7 37419664
    14 8fto:I (1.85) BS01 rna ? GO:0000049 ... P0A7X3 37419664
    15 8fto:I (1.85) BS02 rna ? GO:0000049 ... P0A7X3 37419664
    16 8fto:J (1.85) BS01 rna ? GO:0000049 ... P0A7R5 37419664
    17 8fto:K (1.85) BS01 rna ? GO:0002181 ... P0A7R9 37419664
    18 8fto:L (1.85) BS01 rna ? GO:0000049 ... P0A7S3 37419664
    19 8fto:M (1.85) BS01 rna ? GO:0000049 ... P0A7S9 37419664
    20 8fto:M (1.85) BS02 rna ? GO:0000049 ... P0A7S9 37419664
    21 8fto:N (1.85) BS01 rna ? GO:0000028 ... P0AG59 37419664
    22 8fto:O (1.85) BS01 rna ? GO:0000028 ... P0ADZ4 37419664
    23 8fto:O (1.85) BS02 rna ? GO:0000028 ... P0ADZ4 37419664
    24 8fto:P (1.85) BS01 rna ? GO:0000028 ... P0A7T3 37419664
    25 8fto:Q (1.85) BS01 rna ? GO:0000028 ... P0AG63 37419664
    26 8fto:R (1.85) BS01 rna ? GO:0002181 ... P0A7T7 37419664
    27 8fto:S (1.85) BS01 rna ? GO:0000028 ... P0A7U3 37419664
    28 8fto:T (1.85) BS01 rna ? GO:0000028 ... P0A7U7 37419664
    29 8fto:U (1.85) BS01 rna ? GO:0000028 ... P68679 37419664
    30 8fto:c (1.85) BS01 rna ? GO:0000027 ... P60422 37419664
    31 8fto:c (1.85) BS02 rna ? GO:0000027 ... P60422 37419664
    32 8fto:d (1.85) BS01 rna ? GO:0000027 ... P60438 37419664
    33 8fto:e (1.85) BS01 rna ? GO:0001070 ... P60723 37419664
    34 8fto:f (1.85) BS01 rna ? GO:0000027 ... P62399 37419664
    35 8fto:f (1.85) BS02 rna ? GO:0000027 ... P62399 37419664
    36 8fto:f (1.85) BS03 rna ? GO:0000027 ... P62399 37419664
    37 8fto:g (1.85) BS01 rna ? GO:0000027 ... P0AG55 37419664
    38 8fto:h (1.85) BS01 rna ? GO:0002181 ... P0A7R1 37419664
    39 8fto:i (1.85) BS01 rna ? GO:0002181 ... P0AA10 37419664
    40 8fto:j (1.85) BS01 rna ? GO:0002181 ... P0ADY3 37419664
    41 8fto:j (1.85) BS02 rna ? GO:0002181 ... P0ADY3 37419664
    42 8fto:k (1.85) BS01 rna ? GO:0002181 ... P02413 37419664
    43 8fto:l (1.85) BS01 rna ? GO:0000027 ... P0ADY7 37419664
    44 8fto:l (1.85) BS02 rna ? GO:0000027 ... P0ADY7 37419664
    45 8fto:m (1.85) BS01 rna ? GO:0000027 ... P0AG44 37419664
    46 8fto:n (1.85) BS01 rna ? GO:0002181 ... P0C018 37419664
    47 8fto:n (1.85) BS02 rna ? GO:0002181 ... P0C018 37419664
    48 8fto:o (1.85) BS01 rna ? GO:0000027 ... P0A7K6 37419664
    49 8fto:o (1.85) BS02 rna ? GO:0000027 ... P0A7K6 37419664
    50 8fto:p (1.85) BS01 rna ? GO:0000027 ... P0A7L3 37419664
    51 8fto:q (1.85) BS01 rna ? GO:0002181 ... P0AG48 37419664
    52 8fto:r (1.85) BS01 rna ? GO:0002181 ... P61175 37419664
    53 8fto:s (1.85) BS01 rna ? GO:0000027 ... P0ADZ0 37419664
    54 8fto:t (1.85) BS01 rna ? GO:0000027 ... P60624 37419664
    55 8fto:u (1.85) BS01 rna ? GO:0000027 ... P68919 37419664
    56 8fto:v (1.85) BS01 rna ? GO:0000027 ... P0A7L8 37419664
    57 8fto:v (1.85) BS02 rna ? GO:0000027 ... P0A7L8 37419664
    58 8fto:w (1.85) BS01 rna ? GO:0000027 ... P0A7M2 37419664
    59 8fto:x (1.85) BS01 rna ? GO:0000027 ... P0A7M6 37419664
    60 8fto:y (1.85) BS01 rna ? GO:0000027 ... P0AG51 37419664
    61 8fto:y (1.85) BS02 rna ? GO:0000027 ... P0AG51 37419664
    62 8fto:z (1.85) BS01 rna ? GO:0000027 ... P0A7N4 37419664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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