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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8fr8:0 (2.76) BS01 rna ? GO:0003735 ... A0R7K0 37216503
    2 8fr8:1 (2.76) BS01 rna ? GO:0003723 ... A0QSG0 37216503
    3 8fr8:2 (2.76) BS01 rna ? GO:0003735 ... A0R3D2 37216503
    4 8fr8:2 (2.76) BS02 rna ? GO:0003735 ... A0R3D2 37216503
    5 8fr8:4 (2.76) BS01 rna ? GO:0003735 ... A0R150 37216503
    6 8fr8:6 (2.76) BS01 rna ? GO:0003735 ... A0QSD9 37216503
    7 8fr8:7 (2.76) BS01 rna ? GO:0003735 ... A0QSG7 37216503
    8 8fr8:7 (2.76) BS02 rna ? GO:0003735 ... A0QSG7 37216503
    9 8fr8:8 (2.76) BS01 rna ? GO:0003735 ... A0R3I9 37216503
    10 8fr8:9 (2.76) BS01 rna ? GO:0003735 ... A0R550 37216503
    11 8fr8:C (2.76) BS01 rna ? GO:0003735 ... A0QV42 37216503
    12 8fr8:C (2.76) BS02 rna ? GO:0003735 ... A0QV42 37216503
    13 8fr8:D (2.76) BS01 rna ? GO:0003735 ... I7FGD9 37216503
    14 8fr8:D (2.76) BS02 rna ? GO:0003735 ... I7FGD9 37216503
    15 8fr8:F (2.76) BS01 rna ? GO:0003735 ... A0QSL4 37216503
    16 8fr8:G (2.76) BS01 rna ? GO:0003676 ... A0QSD7 37216503
    17 8fr8:H (2.76) BS01 rna ? GO:0003735 ... A0R554 37216503
    18 8fr8:I (2.76) BS01 rna 2.7.6.5 GO:0005886 ... I7FCZ4 37216503
    19 8fr8:J (2.76) BS01 rna ? GO:0003735 ... A0QSL9 37216503
    20 8fr8:K (2.76) BS01 rna ? GO:0002181 ... A0QSD4 37216503
    21 8fr8:L (2.76) BS01 rna ? GO:0003735 ... A0QSD1 37216503
    22 8fr8:M (2.76) BS01 rna ? GO:0003735 ... A0QSD2 37216503
    23 8fr8:N (2.76) BS01 rna ? GO:0000049 ... A0QSD8 37216503
    24 8fr8:N (2.76) BS02 rna ? GO:0000049 ... A0QSD8 37216503
    25 8fr8:O (2.76) BS01 rna ? GO:0000049 ... A0QSG1 37216503
    26 8fr8:O (2.76) BS02 rna ? GO:0000049 ... A0QSG1 37216503
    27 8fr8:O (2.76) BS03 rna ? GO:0000049 ... A0QSG1 37216503
    28 8fr8:P (2.76) BS01 rna ? GO:0002181 ... A0QSG4 37216503
    29 8fr8:Q (2.76) BS01 rna ? GO:0003735 ... A0R7F6 37216503
    30 8fr8:R (2.76) BS01 rna ? GO:0003735 ... A0QS62 37216503
    31 8fr8:S (2.76) BS01 rna ? GO:0003735 ... A0QS45 37216503
    32 8fr8:T (2.76) BS01 rna ? GO:0003729 ... A0QSP8 37216503
    33 8fr8:U (2.76) BS01 rna ? GO:0003735 ... A0QSF9 37216503
    34 8fr8:U (2.76) BS02 rna ? GO:0003735 ... A0QSF9 37216503
    35 8fr8:V (2.76) BS01 rna ? GO:0003735 ... I7G436 37216503
    36 8fr8:W (2.76) BS01 rna ? GO:0000027 ... A0QYU6 37216503
    37 8fr8:X (2.76) BS01 rna ? GO:0003723 ... A0R151 37216503
    38 8fr8:Y (2.76) BS01 rna ? GO:0003735 ... A0QSD6 37216503
    39 8fr8:Z (2.76) BS01 rna ? GO:0000027 ... A0QSD3 37216503
    40 8fr8:b (2.76) BS01 rna N/A N/A N/A 37216503
    41 8fr8:b (2.76) BS02 rna N/A N/A N/A 37216503
    42 8fr8:c (2.76) BS01 rna ? GO:0003735 ... A0R551 37216503
    43 8fr8:d (2.76) BS01 rna ? GO:0003723 ... A0QSD5 37216503
    44 8fr8:e (2.76) BS01 rna ? GO:0003723 ... A0QSL7 37216503
    45 8fr8:f (2.76) BS01 rna ? GO:0003723 ... A0QSG6 37216503
    46 8fr8:g (2.76) BS01 rna ? GO:0003735 ... A0A2U9Q0X2 37216503
    47 8fr8:h (2.76) BS01 rna ? GO:0000028 ... A0QS97 37216503
    48 8fr8:i (2.76) BS01 rna ? GO:0003735 ... A0QSG3 37216503
    49 8fr8:j (2.76) BS01 rna ? GO:0000049 ... A0QSL5 37216503
    50 8fr8:j (2.76) BS02 rna ? GO:0000049 ... A0QSL5 37216503
    51 8fr8:k (2.76) BS01 rna ? GO:0003735 ... A0QSP9 37216503
    52 8fr8:k (2.76) BS02 rna ? GO:0003735 ... A0QSP9 37216503
    53 8fr8:l (2.76) BS01 rna ? GO:0000049 ... A0A7I7K4Z0 37216503
    54 8fr8:m (2.76) BS01 rna ? GO:0003735 ... A0QSL6 37216503
    55 8fr8:n (2.76) BS01 rna ? GO:0000049 ... A0QS96 37216503
    56 8fr8:o (2.76) BS01 rna ? GO:0003735 ... A0R549 37216503
    57 8fr8:p (2.76) BS01 rna ? GO:0003735 ... A0QVQ3 37216503
    58 8fr8:p (2.76) BS02 rna ? GO:0003735 ... A0QVQ3 37216503
    59 8fr8:q (2.76) BS01 rna ? GO:0003735 ... A0QV37 37216503
    60 8fr8:r (2.76) BS01 rna ? GO:0003735 ... A0QSE0 37216503
    61 8fr8:t (2.76) BS01 rna ? GO:0003723 ... A0R102 37216503
    62 8fr8:u (2.76) BS01 rna ? GO:0003735 ... A0QVB8 37216503
    63 8fr8:x (2.76) BS01 rna ? GO:0003735 ... A0QYU7 37216503
    64 8fr8:y (2.76) BS01 rna ? GO:0003735 ... A0R552 37216503
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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