Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 69 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8fmw:AC (2.86) BS01 rna ? GO:0000049 ... O51353 37907464
    2 8fmw:AD (2.86) BS01 rna ? GO:0002181 ... P94270 37907464
    3 8fmw:AE (2.86) BS01 rna ? GO:0003735 ... P94267 37907464
    4 8fmw:AF (2.86) BS01 rna ? GO:0003735 ... P94268 37907464
    5 8fmw:AG (2.86) BS01 rna ? GO:0000049 ... O51443 37907464
    6 8fmw:AG (2.86) BS02 rna ? GO:0000049 ... O51443 37907464
    7 8fmw:AH (2.86) BS01 rna ? GO:0002181 ... O51446 37907464
    8 8fmw:AI (2.86) BS01 rna ? GO:0003735 ... O51139 37907464
    9 8fmw:AJ (2.86) BS01 rna ? GO:0003735 ... O51352 37907464
    10 8fmw:AK (2.86) BS01 rna ? GO:0003735 ... O51354 37907464
    11 8fmw:AL (2.86) BS01 rna ? GO:0003729 ... O51314 37907464
    12 8fmw:AM (2.86) BS01 rna ? GO:0003735 ... O51441 37907464
    13 8fmw:AM (2.86) BS02 rna ? GO:0003735 ... O51441 37907464
    14 8fmw:AN (2.86) BS01 rna ? GO:0003735 ... O51450 37907464
    15 8fmw:AO (2.86) BS01 rna ? GO:0000049 ... O51438 37907464
    16 8fmw:AP (2.86) BS01 rna ? GO:0003735 ... O51456 37907464
    17 8fmw:AQ (2.86) BS01 rna ? GO:0003735 ... O51447 37907464
    18 8fmw:AQ (2.86) BS02 rna ? GO:0003735 ... O51447 37907464
    19 8fmw:AR (2.86) BS01 rna ? GO:0003735 ... O51642 37907464
    20 8fmw:AR (2.86) BS02 rna ? GO:0003735 ... O51642 37907464
    21 8fmw:AS (2.86) BS01 rna ? GO:0000027 ... O51206 37907464
    22 8fmw:AT (2.86) BS01 rna ? GO:0003723 ... O51719 37907464
    23 8fmw:AU (2.86) BS01 rna ? GO:0003735 ... P94272 37907464
    24 8fmw:AV (2.86) BS01 rna ? GO:0000027 ... P94269 37907464
    25 8fmw:AW (2.86) BS01 rna ? GO:0003723 ... O51442 37907464
    26 8fmw:AX (2.86) BS01 rna ? GO:0003723 ... O51727 37907464
    27 8fmw:AX (2.86) BS02 rna ? GO:0003723 ... O51727 37907464
    28 8fmw:AY (2.86) BS01 rna ? GO:0003735 ... O51721 37907464
    29 8fmw:AY (2.86) BS02 rna ? GO:0003735 ... O51721 37907464
    30 8fmw:AZ (2.86) BS01 rna ? GO:0003735 ... O51325 37907464
    31 8fmw:Aa (2.86) BS01 rna ? GO:0003735 ... O51439 37907464
    32 8fmw:Ab (2.86) BS01 rna N/A GO:0003735 ... N/A 37907464
    33 8fmw:Ab (2.86) BS02 rna N/A GO:0003735 ... N/A 37907464
    34 8fmw:Ac (2.86) BS01 rna ? GO:0003735 ... O51247 37907464
    35 8fmw:Ad (2.86) BS01 rna ? GO:0003735 ... O51646 37907464
    36 8fmw:Ad (2.86) BS02 ZN ? GO:0003735 ... O51646 37907464
    37 8fmw:Ae (2.86) BS01 rna ? GO:0003735 ... O51357 37907464
    38 8fmw:Af (2.86) BS01 rna ? GO:0003735 ... P29220 37907464
    39 8fmw:Ag (2.86) BS01 rna ? GO:0003735 ... O51207 37907464
    40 8fmw:Ah (2.86) BS01 rna ? GO:0003735 ... O51452 37907464
    41 8fmw:Ah (2.86) BS02 ZN ? GO:0003735 ... O51452 37907464
    42 8fmw:Ai (2.86) BS01 rna ? N/A O51184 37907464
    43 8fmw:C (2.86) BS01 rna ? GO:0003676 ... P94273 37907464
    44 8fmw:D (2.86) BS01 rna ? GO:0003723 ... O51560 37907464
    45 8fmw:E (2.86) BS01 rna ? GO:0003723 ... O51448 37907464
    46 8fmw:F (2.86) BS01 rna ? GO:0003735 ... O51142 37907464
    47 8fmw:G (2.86) BS01 rna ? GO:0000028 ... O51347 37907464
    48 8fmw:G (2.86) BS02 rna ? GO:0000028 ... O51347 37907464
    49 8fmw:H (2.86) BS01 rna ? GO:0003735 ... O51445 37907464
    50 8fmw:I (2.86) BS01 rna ? GO:0003723 ... O51313 37907464
    51 8fmw:J (2.86) BS01 rna ? GO:0000049 ... P94266 37907464
    52 8fmw:K (2.86) BS01 rna ? GO:0003735 ... O51454 37907464
    53 8fmw:L (2.86) BS01 rna ? GO:0000049 ... O51348 37907464
    54 8fmw:M (2.86) BS01 rna ? GO:0000049 ... O51453 37907464
    55 8fmw:M (2.86) BS02 rna ? GO:0000049 ... O51453 37907464
    56 8fmw:N (2.86) BS01 rna ? GO:0003735 ... O51444 37907464
    57 8fmw:N (2.86) BS02 ZN ? GO:0003735 ... O51444 37907464
    58 8fmw:O (2.86) BS01 rna ? GO:0003735 ... O51744 37907464
    59 8fmw:O (2.86) BS02 rna ? GO:0003735 ... O51744 37907464
    60 8fmw:P (2.86) BS01 rna ? GO:0003735 ... O51638 37907464
    61 8fmw:Q (2.86) BS01 rna ? GO:0003735 ... O51440 37907464
    62 8fmw:R (2.86) BS01 rna ? GO:0003735 ... O51140 37907464
    63 8fmw:R (2.86) BS02 ZN ? GO:0003735 ... O51140 37907464
    64 8fmw:S (2.86) BS01 rna ? GO:0000028 ... P94271 37907464
    65 8fmw:T (2.86) BS01 rna ? GO:0003723 ... P49394 37907464
    66 8fmw:U (2.86) BS01 rna ? GO:0003735 ... O51271 37907464
    67 8fmw:W (2.86) BS01 rna ? GO:0044238 ... O51405 37907464
    68 8fmw:W (2.86) BS02 rna ? GO:0044238 ... O51405 37907464
    69 8fmw:W (2.86) BS03 rna ? GO:0044238 ... O51405 37907464
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218