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BioLiP
Download all results in tab-seperated text for 80 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8flb:BA (2.55) BS01 rna ? GO:0002181 ... P30050 37410842
    2 8flb:L5 (2.55) BS01 rna ? GO:0000027 ... P62913 37410842
    3 8flb:L5 (2.55) BS02 rna ? GO:0000027 ... P62913 37410842
    4 8flb:L6 (2.55) BS01 rna ? GO:0001824 ... P26373 37410842
    5 8flb:L6 (2.55) BS02 rna ? GO:0001824 ... P26373 37410842
    6 8flb:L7 (2.55) BS01 rna ? GO:0002181 ... P40429 37410842
    7 8flb:L8 (2.55) BS01 rna ? GO:0002181 ... P50914 37410842
    8 8flb:L9 (2.55) BS01 rna ? GO:0002181 ... P61313 37410842
    9 8flb:L9 (2.55) BS02 rna ? GO:0002181 ... P61313 37410842
    10 8flb:LA (2.55) BS01 rna ? GO:0002181 ... P18621 37410842
    11 8flb:LA (2.55) BS02 rna ? GO:0002181 ... P18621 37410842
    12 8flb:LB (2.55) BS01 rna ? GO:0002181 ... Q07020 37410842
    13 8flb:LC (2.55) BS01 rna ? GO:0002181 ... Q02543 37410842
    14 8flb:LC (2.55) BS02 rna ? GO:0002181 ... Q02543 37410842
    15 8flb:LD (2.55) BS01 rna ? GO:0002181 ... P84098 37410842
    16 8flb:LE (2.55) BS01 rna ? GO:0002181 ... P46778 37410842
    17 8flb:LE (2.55) BS02 rna ? GO:0002181 ... P46778 37410842
    18 8flb:LF (2.55) BS01 rna ? GO:0002181 ... P35268 37410842
    19 8flb:LG (2.55) BS01 rna ? GO:0000122 ... P62829 37410842
    20 8flb:LH (2.55) BS01 rna ? GO:0000027 ... P62750 37410842
    21 8flb:LH (2.55) BS02 rna ? GO:0000027 ... P62750 37410842
    22 8flb:LI (2.55) BS01 rna ? GO:0002181 ... P61254 37410842
    23 8flb:LI (2.55) BS02 rna ? GO:0002181 ... P61254 37410842
    24 8flb:LJ (2.55) BS01 rna ? GO:0002181 ... P61353 37410842
    25 8flb:LK (2.55) BS01 rna ? GO:0002181 ... P46776 37410842
    26 8flb:LL (2.55) BS01 rna ? GO:0002181 ... P46779 37410842
    27 8flb:LM (2.55) BS01 rna ? GO:0002181 ... P47914 37410842
    28 8flb:LN (2.55) BS01 rna ? GO:0002181 ... P39023 37410842
    29 8flb:LO (2.55) BS01 rna ? GO:0002181 ... P62888 37410842
    30 8flb:LP (2.55) BS01 rna ? GO:0002181 ... P62899 37410842
    31 8flb:LQ (2.55) BS01 rna ? GO:0002181 ... P62910 37410842
    32 8flb:LQ (2.55) BS02 MG ? GO:0002181 ... P62910 37410842
    33 8flb:LR (2.55) BS01 rna ? GO:0002181 ... P49207 37410842
    34 8flb:LR (2.55) BS02 ZN ? GO:0002181 ... P49207 37410842
    35 8flb:LS (2.55) BS01 rna ? GO:0000463 ... P42766 37410842
    36 8flb:LS (2.55) BS02 rna ? GO:0000463 ... P42766 37410842
    37 8flb:LT (2.55) BS01 rna ? GO:0000049 ... P18077 37410842
    38 8flb:LT (2.55) BS02 MG ? GO:0000049 ... P18077 37410842
    39 8flb:LU (2.55) BS01 rna ? GO:0002181 ... Q9Y3U8 37410842
    40 8flb:LV (2.55) BS01 rna ? GO:0002181 ... P83881 37410842
    41 8flb:LV (2.55) BS02 ZN ? GO:0002181 ... P83881 37410842
    42 8flb:LW (2.55) BS01 rna ? GO:0002181 ... P61927 37410842
    43 8flb:LW (2.55) BS02 rna ? GO:0002181 ... P61927 37410842
    44 8flb:LW (2.55) BS03 ZN ? GO:0002181 ... P61927 37410842
    45 8flb:LX (2.55) BS01 rna ? GO:0002181 ... P61513 37410842
    46 8flb:LX (2.55) BS02 ZN ? GO:0002181 ... P61513 37410842
    47 8flb:LY (2.55) BS01 rna ? GO:0001501 ... P63173 37410842
    48 8flb:LZ (2.55) BS01 rna ? GO:0002181 ... P62891 37410842
    49 8flb:LZ (2.55) BS02 rna ? GO:0002181 ... P62891 37410842
    50 8flb:NK (2.55) BS01 rna ? GO:0001099 ... Q9BRT6 37410842
    51 8flb:NL (2.55) BS01 rna ? GO:0000027 ... Q9NZM5 37410842
    52 8flb:NP (2.55) BS01 rna ? GO:0003676 ... O00488 37410842
    53 8flb:NP (2.55) BS02 ZN ? GO:0003676 ... O00488 37410842
    54 8flb:NR (2.55) BS01 rna ? GO:0005515 ... Q96EY4 37410842
    55 8flb:NR (2.55) BS02 rna ? GO:0005515 ... Q96EY4 37410842
    56 8flb:SA (2.55) BS01 rna ? GO:0002181 ... P36578 37410842
    57 8flb:SA (2.55) BS02 rna ? GO:0002181 ... P36578 37410842
    58 8flb:SB (2.55) BS01 rna ? GO:0000027 ... P46777 37410842
    59 8flb:SB (2.55) BS02 rna ? GO:0000027 ... P46777 37410842
    60 8flb:SC (2.55) BS01 rna ? GO:0000027 ... Q02878 37410842
    61 8flb:SD (2.55) BS01 rna ? GO:0000463 ... P18124 37410842
    62 8flb:SD (2.55) BS02 rna ? GO:0000463 ... P18124 37410842
    63 8flb:SE (2.55) BS01 rna ? GO:0000470 ... P62424 37410842
    64 8flb:SE (2.55) BS02 rna ? GO:0000470 ... P62424 37410842
    65 8flb:SF (2.55) BS01 rna ? GO:0002181 ... P62917 37410842
    66 8flb:SF (2.55) BS02 MG ? GO:0002181 ... P62917 37410842
    67 8flb:SG (2.55) BS01 rna ? GO:0002181 ... P32969 37410842
    68 8flb:SI (2.55) BS01 rna ? GO:0000463 ... Q6DKI1 37410842
    69 8flb:SI (2.55) BS02 rna ? GO:0000463 ... Q6DKI1 37410842
    70 8flb:SK (2.55) BS01 rna ? GO:0000054 ... P56537 37410842
    71 8flb:SM (2.55) BS01 rna ? GO:0000463 ... O00541 37410842
    72 8flb:SM (2.55) BS02 rna ? GO:0000463 ... O00541 37410842
    73 8flb:SQ (2.55) BS01 rna ? GO:0000027 ... Q9UKD2 37410842
    74 8flb:SR (2.55) BS01 rna ? GO:0000079 ... Q9BZE4 37410842
    75 8flb:SR (2.55) BS02 rna ? GO:0000079 ... Q9BZE4 37410842
    76 8flb:SR (2.55) BS03 GDP ? GO:0000079 ... Q9BZE4 37410842
    77 8flb:SR (2.55) BS04 MG ? GO:0000079 ... Q9BZE4 37410842
    78 8flb:SV (2.55) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    79 8flb:SV (2.55) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    80 8flb:VB (2.55) BS01 rna ? N/A Q9UNZ5 37410842
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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