Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 93 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8fl2:BA (2.67) BS01 rna ? GO:0002181 ... P30050 37410842
    2 8fl2:BB (2.67) BS01 rna ? GO:0002181 ... P62906 37410842
    3 8fl2:L5 (2.67) BS01 rna ? GO:0000027 ... P62913 37410842
    4 8fl2:L5 (2.67) BS02 rna ? GO:0000027 ... P62913 37410842
    5 8fl2:L6 (2.67) BS01 rna ? GO:0001824 ... P26373 37410842
    6 8fl2:L6 (2.67) BS02 rna ? GO:0001824 ... P26373 37410842
    7 8fl2:L6 (2.67) BS03 MG ? GO:0001824 ... P26373 37410842
    8 8fl2:L7 (2.67) BS01 rna ? GO:0002181 ... P40429 37410842
    9 8fl2:L8 (2.67) BS01 rna ? GO:0002181 ... P50914 37410842
    10 8fl2:L9 (2.67) BS01 rna ? GO:0002181 ... P61313 37410842
    11 8fl2:L9 (2.67) BS02 rna ? GO:0002181 ... P61313 37410842
    12 8fl2:L9 (2.67) BS03 MG ? GO:0002181 ... P61313 37410842
    13 8fl2:LA (2.67) BS01 rna ? GO:0002181 ... P18621 37410842
    14 8fl2:LA (2.67) BS02 rna ? GO:0002181 ... P18621 37410842
    15 8fl2:LB (2.67) BS01 rna ? GO:0002181 ... Q07020 37410842
    16 8fl2:LC (2.67) BS01 rna ? GO:0002181 ... Q02543 37410842
    17 8fl2:LC (2.67) BS02 rna ? GO:0002181 ... Q02543 37410842
    18 8fl2:LD (2.67) BS01 rna ? GO:0002181 ... P84098 37410842
    19 8fl2:LE (2.67) BS01 rna ? GO:0002181 ... P46778 37410842
    20 8fl2:LE (2.67) BS02 rna ? GO:0002181 ... P46778 37410842
    21 8fl2:LF (2.67) BS01 rna ? GO:0002181 ... P35268 37410842
    22 8fl2:LG (2.67) BS01 rna ? GO:0000122 ... P62829 37410842
    23 8fl2:LH (2.67) BS01 rna ? GO:0000027 ... P62750 37410842
    24 8fl2:LH (2.67) BS02 rna ? GO:0000027 ... P62750 37410842
    25 8fl2:LI (2.67) BS01 rna ? GO:0002181 ... P61254 37410842
    26 8fl2:LI (2.67) BS02 rna ? GO:0002181 ... P61254 37410842
    27 8fl2:LJ (2.67) BS01 rna ? GO:0002181 ... P61353 37410842
    28 8fl2:LK (2.67) BS01 rna ? GO:0002181 ... P46776 37410842
    29 8fl2:LL (2.67) BS01 rna ? GO:0002181 ... P46779 37410842
    30 8fl2:LN (2.67) BS01 rna ? GO:0002181 ... P39023 37410842
    31 8fl2:LO (2.67) BS01 rna ? GO:0002181 ... P62888 37410842
    32 8fl2:LP (2.67) BS01 rna ? GO:0002181 ... P62899 37410842
    33 8fl2:LQ (2.67) BS01 rna ? GO:0002181 ... P62910 37410842
    34 8fl2:LQ (2.67) BS02 MG ? GO:0002181 ... P62910 37410842
    35 8fl2:LR (2.67) BS01 rna ? GO:0002181 ... P49207 37410842
    36 8fl2:LR (2.67) BS02 MG ? GO:0002181 ... P49207 37410842
    37 8fl2:LR (2.67) BS03 ZN ? GO:0002181 ... P49207 37410842
    38 8fl2:LS (2.67) BS01 rna ? GO:0000463 ... P42766 37410842
    39 8fl2:LS (2.67) BS02 rna ? GO:0000463 ... P42766 37410842
    40 8fl2:LT (2.67) BS01 rna ? GO:0000049 ... P18077 37410842
    41 8fl2:LT (2.67) BS02 MG ? GO:0000049 ... P18077 37410842
    42 8fl2:LU (2.67) BS01 rna ? GO:0002181 ... Q9Y3U8 37410842
    43 8fl2:LW (2.67) BS01 rna ? GO:0002181 ... P61927 37410842
    44 8fl2:LW (2.67) BS02 rna ? GO:0002181 ... P61927 37410842
    45 8fl2:LW (2.67) BS03 ZN ? GO:0002181 ... P61927 37410842
    46 8fl2:LX (2.67) BS01 rna ? GO:0002181 ... P61513 37410842
    47 8fl2:LX (2.67) BS02 ZN ? GO:0002181 ... P61513 37410842
    48 8fl2:LY (2.67) BS01 rna ? GO:0001501 ... P63173 37410842
    49 8fl2:LZ (2.67) BS01 rna ? GO:0002181 ... P62891 37410842
    50 8fl2:LZ (2.67) BS02 rna ? GO:0002181 ... P62891 37410842
    51 8fl2:NB (2.67) BS01 rna ? GO:0003723 ... Q9BVP2 37410842
    52 8fl2:NB (2.67) BS02 rna ? GO:0003723 ... Q9BVP2 37410842
    53 8fl2:NC (2.67) BS01 rna ? GO:0003723 ... Q13823 37410842
    54 8fl2:NC (2.67) BS02 GTP ? GO:0003723 ... Q13823 37410842
    55 8fl2:NC (2.67) BS03 MG ? GO:0003723 ... Q13823 37410842
    56 8fl2:NF (2.67) BS01 rna ? GO:0000460 ... O95478 37410842
    57 8fl2:NJ (2.67) BS01 rna ? GO:0000027 ... Q9NVX2 37410842
    58 8fl2:NK (2.67) BS01 rna ? GO:0001099 ... Q9BRT6 37410842
    59 8fl2:NL (2.67) BS01 rna ? GO:0000027 ... Q9NZM5 37410842
    60 8fl2:NP (2.67) BS01 rna ? GO:0003676 ... O00488 37410842
    61 8fl2:NP (2.67) BS02 ZN ? GO:0003676 ... O00488 37410842
    62 8fl2:NT (2.67) BS01 rna ? GO:0000055 ... Q9NVU7 37410842
    63 8fl2:NU (2.67) BS01 peptide ? GO:0005515 ... Q9NXF1 37410842
    64 8fl2:NU (2.67) BS02 rna ? GO:0005515 ... Q9NXF1 37410842
    65 8fl2:NY (2.67) BS01 rna ? GO:0000791 ... Q8IZL8 37410842
    66 8fl2:NZ (2.67) BS01 rna ? GO:0003723 ... Q9H6F5 37410842
    67 8fl2:NZ (2.67) BS02 rna ? GO:0003723 ... Q9H6F5 37410842
    68 8fl2:SA (2.67) BS01 rna ? GO:0002181 ... P36578 37410842
    69 8fl2:SA (2.67) BS02 rna ? GO:0002181 ... P36578 37410842
    70 8fl2:SB (2.67) BS01 rna ? GO:0000027 ... P46777 37410842
    71 8fl2:SB (2.67) BS02 rna ? GO:0000027 ... P46777 37410842
    72 8fl2:SC (2.67) BS01 rna ? GO:0000027 ... Q02878 37410842
    73 8fl2:SD (2.67) BS01 rna ? GO:0000463 ... P18124 37410842
    74 8fl2:SD (2.67) BS02 rna ? GO:0000463 ... P18124 37410842
    75 8fl2:SE (2.67) BS01 rna ? GO:0000470 ... P62424 37410842
    76 8fl2:SE (2.67) BS02 rna ? GO:0000470 ... P62424 37410842
    77 8fl2:SF (2.67) BS01 rna ? GO:0002181 ... P62917 37410842
    78 8fl2:SF (2.67) BS02 MG ? GO:0002181 ... P62917 37410842
    79 8fl2:SG (2.67) BS01 rna ? GO:0002181 ... P32969 37410842
    80 8fl2:SH (2.67) BS01 rna ? GO:0000463 ... Q9BYG3 37410842
    81 8fl2:SI (2.67) BS01 rna ? GO:0000463 ... Q6DKI1 37410842
    82 8fl2:SI (2.67) BS02 rna ? GO:0000463 ... Q6DKI1 37410842
    83 8fl2:SI (2.67) BS03 rna ? GO:0000463 ... Q6DKI1 37410842
    84 8fl2:SK (2.67) BS01 rna ? GO:0000054 ... P56537 37410842
    85 8fl2:SL (2.67) BS01 rna ? GO:0000462 ... O76021 37410842
    86 8fl2:SM (2.67) BS01 rna ? GO:0000463 ... O00541 37410842
    87 8fl2:SM (2.67) BS02 rna ? GO:0000463 ... O00541 37410842
    88 8fl2:SQ (2.67) BS01 rna ? GO:0000027 ... Q9UKD2 37410842
    89 8fl2:SR (2.67) BS01 rna ? GO:0000079 ... Q9BZE4 37410842
    90 8fl2:SR (2.67) BS02 rna ? GO:0000079 ... Q9BZE4 37410842
    91 8fl2:SR (2.67) BS03 GDP ? GO:0000079 ... Q9BZE4 37410842
    92 8fl2:SV (2.67) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    93 8fl2:SV (2.67) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218