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BioLiP
Download all results in tab-seperated text for 47 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ev3:3 (3.0) BS01 rna ? GO:0000460 ... Q9UTE6 36423630
    2 8ev3:4 (3.0) BS01 rna ? GO:0003674 ... Q9Y7M6 36423630
    3 8ev3:5 (3.0) BS01 rna ? GO:0003674 ... O94698 36423630
    4 8ev3:A (3.0) BS01 rna ? GO:0000027 ... Q9HGL6 36423630
    5 8ev3:B (3.0) BS01 rna ? GO:0002181 ... P40372 36423630
    6 8ev3:C (3.0) BS01 rna ? GO:0002181 ... Q9P784 36423630
    7 8ev3:C (3.0) BS02 rna ? GO:0002181 ... Q9P784 36423630
    8 8ev3:D (3.0) BS01 rna 3.6.4.13 GO:0000463 ... Q09916 36423630
    9 8ev3:E (3.0) BS01 rna ? GO:0000027 ... P79071 36423630
    10 8ev3:F (3.0) BS01 rna ? GO:0000463 ... P25457 36423630
    11 8ev3:F (3.0) BS02 peptide ? GO:0000463 ... P25457 36423630
    12 8ev3:G (3.0) BS01 rna ? GO:0000470 ... O13672 36423630
    13 8ev3:G (3.0) BS02 rna ? GO:0000470 ... O13672 36423630
    14 8ev3:G (3.0) BS03 rna ? GO:0000470 ... O13672 36423630
    15 8ev3:H (3.0) BS01 rna ? GO:0002181 ... Q10232 36423630
    16 8ev3:K (3.0) BS01 rna ? GO:0000462 ... Q9UT32 36423630
    17 8ev3:L (3.0) BS01 rna ? GO:0002181 ... O74175 36423630
    18 8ev3:L (3.0) BS02 rna ? GO:0002181 ... O74175 36423630
    19 8ev3:M (3.0) BS01 rna ? GO:0002181 ... O94238 36423630
    20 8ev3:N (3.0) BS01 rna ? GO:0002181 ... O74895 36423630
    21 8ev3:N (3.0) BS02 rna ? GO:0002181 ... O74895 36423630
    22 8ev3:O (3.0) BS01 rna ? GO:0002181 ... O42991 36423630
    23 8ev3:P (3.0) BS01 rna ? GO:0002181 ... O14339 36423630
    24 8ev3:P (3.0) BS02 rna ? GO:0002181 ... O14339 36423630
    25 8ev3:Q (3.0) BS01 rna ? GO:0002181 ... Q10192 36423630
    26 8ev3:S (3.0) BS01 rna ? GO:0002181 ... P0CT68 36423630
    27 8ev3:S (3.0) BS02 peptide ? GO:0002181 ... P0CT68 36423630
    28 8ev3:Y (3.0) BS01 rna ? GO:0002181 ... P78946 36423630
    29 8ev3:Y (3.0) BS02 rna ? GO:0002181 ... P78946 36423630
    30 8ev3:e (3.0) BS01 rna ? GO:0002181 ... P79015 36423630
    31 8ev3:f (3.0) BS01 rna ? GO:0002181 ... Q9USG6 36423630
    32 8ev3:h (3.0) BS01 rna ? GO:0000463 ... O74904 36423630
    33 8ev3:h (3.0) BS02 rna ? GO:0000463 ... O74904 36423630
    34 8ev3:i (3.0) BS01 rna ? GO:0002181 ... O94658 36423630
    35 8ev3:j (3.0) BS01 rna ? GO:0002181 ... P05733 36423630
    36 8ev3:j (3.0) BS02 rna ? GO:0002181 ... P05733 36423630
    37 8ev3:j (3.0) BS03 ZN ? GO:0002181 ... P05733 36423630
    38 8ev3:m (3.0) BS01 rna ? GO:0000463 ... O74399 36423630
    39 8ev3:n (3.0) BS01 rna ? GO:0000463 ... O60164 36423630
    40 8ev3:o (3.0) BS01 rna ? GO:0000463 ... O74978 36423630
    41 8ev3:r (3.0) BS01 rna ? GO:0000460 ... Q9UU79 36423630
    42 8ev3:t (3.0) BS01 rna ? GO:0000463 ... P17937 36423630
    43 8ev3:t (3.0) BS02 rna ? GO:0000463 ... P17937 36423630
    44 8ev3:v (3.0) BS01 rna ? GO:0003674 ... Q9Y7Z1 36423630
    45 8ev3:v (3.0) BS02 rna ? GO:0003674 ... Q9Y7Z1 36423630
    46 8ev3:x (3.0) BS01 rna ? GO:0000460 ... O14180 36423630
    47 8ev3:x (3.0) BS02 rna ? GO:0000460 ... O14180 36423630
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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