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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8esz:1 (3.4) BS01 U10 7.1.1.2 GO:0005739 ... C7DZL9 36952377
    2 8esz:1 (3.4) BS02 WSF 7.1.1.2 GO:0005739 ... C7DZL9 36952377
    3 8esz:3 (3.4) BS01 WSF 7.1.1.2 GO:0005739 ... P18930 36952377
    4 8esz:6 (3.4) BS01 WSF 7.1.1.2 GO:0005739 ... P18933 36952377
    5 8esz:A6 (3.4) BS01 ZMP ? GO:0005739 ... Q7JZK1 36952377
    6 8esz:A9 (3.4) BS01 NDP 1.6.99.3 GO:0005739 ... Q9VPE2 36952377
    7 8esz:AC (3.4) BS01 ZMP ? GO:0000035 ... Q94519 36952377
    8 8esz:AL (3.4) BS01 DGT ? GO:0005515 ... P91929 36952377
    9 8esz:B9 (3.4) BS01 ZMP ? GO:0005739 ... Q9VJZ4 36952377
    10 8esz:S1 (3.4) BS01 SF4 7.1.1.2 GO:0005739 ... Q94511 36952377
    11 8esz:S1 (3.4) BS02 SF4 7.1.1.2 GO:0005739 ... Q94511 36952377
    12 8esz:S1 (3.4) BS03 FES 7.1.1.2 GO:0005739 ... Q94511 36952377
    13 8esz:S2 (3.4) BS01 SF4 ? GO:0003954 ... Q9V4E0 36952377
    14 8esz:S2 (3.4) BS02 U10 ? GO:0003954 ... Q9V4E0 36952377
    15 8esz:S6 (3.4) BS01 ZN ? GO:0005739 ... Q9VMU0 36952377
    16 8esz:S7 (3.4) BS01 SF4 ? GO:0000302 ... Q9VXK7 36952377
    17 8esz:S7 (3.4) BS02 U10 ? GO:0000302 ... Q9VXK7 36952377
    18 8esz:S8 (3.4) BS01 SF4 7.1.1.2 GO:0003954 ... Q9VF27 36952377
    19 8esz:S8 (3.4) BS02 SF4 7.1.1.2 GO:0003954 ... Q9VF27 36952377
    20 8esz:V1 (3.4) BS01 peptide 7.1.1.2 GO:0005739 ... Q9VMI3 36952377
    21 8esz:V1 (3.4) BS02 FMN 7.1.1.2 GO:0005739 ... Q9VMI3 36952377
    22 8esz:V1 (3.4) BS03 SF4 7.1.1.2 GO:0005739 ... Q9VMI3 36952377
    23 8esz:V2 (3.4) BS01 peptide ? GO:0003954 ... Q9VX36 36952377
    24 8esz:V2 (3.4) BS02 FES ? GO:0003954 ... Q9VX36 36952377
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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