Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8emm:0 (2.1) BS01 rna ? GO:0000027 ... P0A7N9 37308707
    2 8emm:1 (2.1) BS01 rna ? GO:0002181 ... P0A7P5 37308707
    3 8emm:2 (2.1) BS01 rna ? GO:0002181 ... P0A7Q1 37308707
    4 8emm:3 (2.1) BS01 rna ? GO:0002181 ... P0A7Q6 37308707
    5 8emm:3 (2.1) BS02 ZN ? GO:0002181 ... P0A7Q6 37308707
    6 8emm:4 (2.1) BS01 rna ? GO:0002181 ... P0A7M9 37308707
    7 8emm:4 (2.1) BS02 rna ? GO:0002181 ... P0A7M9 37308707
    8 8emm:4 (2.1) BS03 ZN ? GO:0002181 ... P0A7M9 37308707
    9 8emm:B (2.1) BS01 rna ? GO:0000028 ... P0A7V0 37308707
    10 8emm:C (2.1) BS01 rna ? GO:0000028 ... P0A7V3 37308707
    11 8emm:C (2.1) BS02 rna ? GO:0000028 ... P0A7V3 37308707
    12 8emm:D (2.1) BS01 rna ? GO:0000028 ... P0A7V8 37308707
    13 8emm:E (2.1) BS01 rna ? GO:0000028 ... P0A7W1 37308707
    14 8emm:E (2.1) BS02 rna ? GO:0000028 ... P0A7W1 37308707
    15 8emm:F (2.1) BS01 rna ? GO:0002181 ... P02358 37308707
    16 8emm:G (2.1) BS01 rna ? GO:0000028 ... P02359 37308707
    17 8emm:G (2.1) BS02 rna ? GO:0000028 ... P02359 37308707
    18 8emm:H (2.1) BS01 rna ? GO:0000028 ... P0A7W7 37308707
    19 8emm:I (2.1) BS01 rna ? GO:0000049 ... P0A7X3 37308707
    20 8emm:I (2.1) BS02 rna ? GO:0000049 ... P0A7X3 37308707
    21 8emm:J (2.1) BS01 rna ? GO:0000049 ... P0A7R5 37308707
    22 8emm:K (2.1) BS01 rna ? GO:0002181 ... P0A7R9 37308707
    23 8emm:L (2.1) BS01 rna ? GO:0000049 ... P0A7S3 37308707
    24 8emm:L (2.1) BS02 rna ? GO:0000049 ... P0A7S3 37308707
    25 8emm:M (2.1) BS01 rna ? GO:0000049 ... P0A7S9 37308707
    26 8emm:M (2.1) BS02 rna ? GO:0000049 ... P0A7S9 37308707
    27 8emm:N (2.1) BS01 rna ? GO:0000028 ... P0AG59 37308707
    28 8emm:O (2.1) BS01 rna ? GO:0000028 ... P0ADZ4 37308707
    29 8emm:O (2.1) BS02 rna ? GO:0000028 ... P0ADZ4 37308707
    30 8emm:P (2.1) BS01 rna ? GO:0000028 ... P0A7T3 37308707
    31 8emm:Q (2.1) BS01 rna ? GO:0000028 ... P0AG63 37308707
    32 8emm:R (2.1) BS01 rna ? GO:0002181 ... P0A7T7 37308707
    33 8emm:S (2.1) BS01 rna ? GO:0000028 ... P0A7U3 37308707
    34 8emm:T (2.1) BS01 rna ? GO:0000028 ... P0A7U7 37308707
    35 8emm:U (2.1) BS01 rna ? GO:0000028 ... P68679 37308707
    36 8emm:c (2.1) BS01 rna ? GO:0000027 ... P60422 37308707
    37 8emm:c (2.1) BS02 rna ? GO:0000027 ... P60422 37308707
    38 8emm:d (2.1) BS01 rna ? GO:0000027 ... P60438 37308707
    39 8emm:e (2.1) BS01 rna ? GO:0001070 ... P60723 37308707
    40 8emm:f (2.1) BS01 rna ? GO:0000027 ... P62399 37308707
    41 8emm:f (2.1) BS02 rna ? GO:0000027 ... P62399 37308707
    42 8emm:f (2.1) BS03 rna ? GO:0000027 ... P62399 37308707
    43 8emm:g (2.1) BS01 rna ? GO:0000027 ... P0AG55 37308707
    44 8emm:h (2.1) BS01 rna ? GO:0002181 ... P0A7R1 37308707
    45 8emm:i (2.1) BS01 rna ? GO:0002181 ... P0AA10 37308707
    46 8emm:j (2.1) BS01 rna ? GO:0002181 ... P0ADY3 37308707
    47 8emm:j (2.1) BS02 rna ? GO:0002181 ... P0ADY3 37308707
    48 8emm:k (2.1) BS01 rna ? GO:0002181 ... P02413 37308707
    49 8emm:l (2.1) BS01 rna ? GO:0000027 ... P0ADY7 37308707
    50 8emm:l (2.1) BS02 rna ? GO:0000027 ... P0ADY7 37308707
    51 8emm:l (2.1) BS03 rna ? GO:0000027 ... P0ADY7 37308707
    52 8emm:m (2.1) BS01 rna ? GO:0000027 ... P0AG44 37308707
    53 8emm:n (2.1) BS01 rna ? GO:0002181 ... P0C018 37308707
    54 8emm:n (2.1) BS02 rna ? GO:0002181 ... P0C018 37308707
    55 8emm:o (2.1) BS01 rna ? GO:0000027 ... P0A7K6 37308707
    56 8emm:o (2.1) BS02 rna ? GO:0000027 ... P0A7K6 37308707
    57 8emm:p (2.1) BS01 rna ? GO:0000027 ... P0A7L3 37308707
    58 8emm:q (2.1) BS01 rna ? GO:0002181 ... P0AG48 37308707
    59 8emm:r (2.1) BS01 rna ? GO:0002181 ... P61175 37308707
    60 8emm:s (2.1) BS01 rna ? GO:0000027 ... P0ADZ0 37308707
    61 8emm:t (2.1) BS01 rna ? GO:0000027 ... P60624 37308707
    62 8emm:u (2.1) BS01 rna ? GO:0000027 ... P68919 37308707
    63 8emm:v (2.1) BS01 rna ? GO:0000027 ... P0A7L8 37308707
    64 8emm:v (2.1) BS02 rna ? GO:0000027 ... P0A7L8 37308707
    65 8emm:w (2.1) BS01 rna ? GO:0000027 ... P0A7M2 37308707
    66 8emm:x (2.1) BS01 rna ? GO:0000027 ... P0A7M6 37308707
    67 8emm:y (2.1) BS01 rna ? GO:0000027 ... P0AG51 37308707
    68 8emm:z (2.1) BS01 rna ? GO:0000027 ... P0A7N4 37308707
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218