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BioLiP
Download all results in tab-seperated text for 74 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8el3:A (1.57) BS01 PEB ? GO:0030089 ... U5TBU5 37957226
    2 8el3:A (1.57) BS02 AX9 ? GO:0030089 ... U5TBU5 37957226
    3 8el3:A (1.57) BS03 PEB ? GO:0030089 ... U5TBU5 37957226
    4 8el3:A (1.57) BS04 PEB ? GO:0030089 ... U5TBU5 37957226
    5 8el3:A (1.57) BS05 PEB ? GO:0030089 ... U5TBU5 37957226
    6 8el3:A (1.57) BS06 PEB ? GO:0030089 ... U5TBU5 37957226
    7 8el3:A (1.57) BS07 PEB ? GO:0030089 ... U5TBU5 37957226
    8 8el3:B (1.57) BS01 AX9 ? GO:0009507 ... U5T8W0 37957226
    9 8el3:B (1.57) BS02 PEB ? GO:0009507 ... U5T8W0 37957226
    10 8el3:B (1.57) BS03 PEB ? GO:0009507 ... U5T8W0 37957226
    11 8el3:B (1.57) BS04 PEB ? GO:0009507 ... U5T8W0 37957226
    12 8el3:B (1.57) BS05 PEB ? GO:0009507 ... U5T8W0 37957226
    13 8el3:C (1.57) BS01 PEB ? GO:0030089 ... U5TBJ3 37957226
    14 8el3:C (1.57) BS02 PEB ? GO:0030089 ... U5TBJ3 37957226
    15 8el3:C (1.57) BS03 AX9 ? GO:0030089 ... U5TBJ3 37957226
    16 8el3:C (1.57) BS04 PEB ? GO:0030089 ... U5TBJ3 37957226
    17 8el3:C (1.57) BS05 PEB ? GO:0030089 ... U5TBJ3 37957226
    18 8el3:C (1.57) BS06 PEB ? GO:0030089 ... U5TBJ3 37957226
    19 8el3:C (1.57) BS07 PEB ? GO:0030089 ... U5TBJ3 37957226
    20 8el3:D (1.57) BS01 AX9 ? GO:0009507 ... U5T8W0 37957226
    21 8el3:D (1.57) BS02 PEB ? GO:0009507 ... U5T8W0 37957226
    22 8el3:D (1.57) BS03 PEB ? GO:0009507 ... U5T8W0 37957226
    23 8el3:E (1.57) BS01 PEB ? GO:0030089 ... U5TBJ3 37957226
    24 8el3:E (1.57) BS02 AX9 ? GO:0030089 ... U5TBJ3 37957226
    25 8el3:E (1.57) BS03 PEB ? GO:0030089 ... U5TBJ3 37957226
    26 8el3:E (1.57) BS04 PEB ? GO:0030089 ... U5TBJ3 37957226
    27 8el3:E (1.57) BS05 PEB ? GO:0030089 ... U5TBJ3 37957226
    28 8el3:E (1.57) BS06 PEB ? GO:0030089 ... U5TBJ3 37957226
    29 8el3:E (1.57) BS07 PEB ? GO:0030089 ... U5TBJ3 37957226
    30 8el3:F (1.57) BS01 AX9 ? GO:0009507 ... U5T8W0 37957226
    31 8el3:F (1.57) BS02 PEB ? GO:0009507 ... U5T8W0 37957226
    32 8el3:F (1.57) BS03 PEB ? GO:0009507 ... U5T8W0 37957226
    33 8el3:F (1.57) BS04 PEB ? GO:0009507 ... U5T8W0 37957226
    34 8el3:F (1.57) BS05 PEB ? GO:0009507 ... U5T8W0 37957226
    35 8el3:G (1.57) BS01 PEB ? GO:0030089 ... U5TBU5 37957226
    36 8el3:G (1.57) BS02 PEB ? GO:0030089 ... U5TBU5 37957226
    37 8el3:G (1.57) BS03 AX9 ? GO:0030089 ... U5TBU5 37957226
    38 8el3:G (1.57) BS04 PEB ? GO:0030089 ... U5TBU5 37957226
    39 8el3:G (1.57) BS05 PEB ? GO:0030089 ... U5TBU5 37957226
    40 8el3:G (1.57) BS06 PEB ? GO:0030089 ... U5TBU5 37957226
    41 8el3:G (1.57) BS07 PEB ? GO:0030089 ... U5TBU5 37957226
    42 8el3:H (1.57) BS01 PEB ? GO:0009507 ... U5T8W0 37957226
    43 8el3:H (1.57) BS02 AX9 ? GO:0009507 ... U5T8W0 37957226
    44 8el3:H (1.57) BS03 PEB ? GO:0009507 ... U5T8W0 37957226
    45 8el3:H (1.57) BS04 PEB ? GO:0009507 ... U5T8W0 37957226
    46 8el3:H (1.57) BS05 PEB ? GO:0009507 ... U5T8W0 37957226
    47 8el3:I (1.57) BS01 PEB ? GO:0030089 ... U5TBJ3 37957226
    48 8el3:I (1.57) BS02 AX9 ? GO:0030089 ... U5TBJ3 37957226
    49 8el3:I (1.57) BS03 PEB ? GO:0030089 ... U5TBJ3 37957226
    50 8el3:I (1.57) BS04 PEB ? GO:0030089 ... U5TBJ3 37957226
    51 8el3:I (1.57) BS05 PEB ? GO:0030089 ... U5TBJ3 37957226
    52 8el3:I (1.57) BS06 PEB ? GO:0030089 ... U5TBJ3 37957226
    53 8el3:I (1.57) BS07 PEB ? GO:0030089 ... U5TBJ3 37957226
    54 8el3:J (1.57) BS01 PEB ? GO:0030089 ... U5TBU5 37957226
    55 8el3:J (1.57) BS02 PEB ? GO:0030089 ... U5TBU5 37957226
    56 8el3:J (1.57) BS03 AX9 ? GO:0030089 ... U5TBU5 37957226
    57 8el3:J (1.57) BS04 PEB ? GO:0030089 ... U5TBU5 37957226
    58 8el3:J (1.57) BS05 PEB ? GO:0030089 ... U5TBU5 37957226
    59 8el3:J (1.57) BS06 PEB ? GO:0030089 ... U5TBU5 37957226
    60 8el3:J (1.57) BS07 PEB ? GO:0030089 ... U5TBU5 37957226
    61 8el3:K (1.57) BS01 PEB ? GO:0030089 ... U5TBU5 37957226
    62 8el3:K (1.57) BS02 AX9 ? GO:0030089 ... U5TBU5 37957226
    63 8el3:K (1.57) BS03 PEB ? GO:0030089 ... U5TBU5 37957226
    64 8el3:K (1.57) BS04 PEB ? GO:0030089 ... U5TBU5 37957226
    65 8el3:K (1.57) BS05 PEB ? GO:0030089 ... U5TBU5 37957226
    66 8el3:K (1.57) BS06 PEB ? GO:0030089 ... U5TBU5 37957226
    67 8el3:K (1.57) BS07 PEB ? GO:0030089 ... U5TBU5 37957226
    68 8el3:L (1.57) BS01 PEB ? GO:0030089 ... U5TBJ3 37957226
    69 8el3:L (1.57) BS02 PEB ? GO:0030089 ... U5TBJ3 37957226
    70 8el3:L (1.57) BS03 AX9 ? GO:0030089 ... U5TBJ3 37957226
    71 8el3:L (1.57) BS04 PEB ? GO:0030089 ... U5TBJ3 37957226
    72 8el3:L (1.57) BS05 PEB ? GO:0030089 ... U5TBJ3 37957226
    73 8el3:L (1.57) BS06 PEB ? GO:0030089 ... U5TBJ3 37957226
    74 8el3:L (1.57) BS07 PEB ? GO:0030089 ... U5TBJ3 37957226
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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