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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ebv:A (7.1) BS01 dna 5.6.2.4 GO:0000112 ... P19447 37076618
    2 8ebv:A (7.1) BS02 dna 5.6.2.4 GO:0000112 ... P19447 37076618
    3 8ebv:B (7.1) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 37076618
    4 8ebv:E (7.1) BS01 ZN ? GO:0000438 ... Q13888 37076618
    5 8ebv:E (7.1) BS02 ZN ? GO:0000438 ... Q13888 37076618
    6 8ebv:E (7.1) BS03 ZN ? GO:0000438 ... Q13888 37076618
    7 8ebv:F (7.1) BS01 ZN ? GO:0000438 ... Q13889 37076618
    8 8ebv:F (7.1) BS02 ZN ? GO:0000438 ... Q13889 37076618
    9 8ebv:H (7.1) BS01 dna ? GO:0000109 ... Q01831 37076618
    10 8ebv:H (7.1) BS02 dna ? GO:0000109 ... Q01831 37076618
    11 8ebv:J (7.1) BS01 CA ? GO:0000278 ... P41208 37076618
    12 8ebv:J (7.1) BS02 CA ? GO:0000278 ... P41208 37076618
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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