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BioLiP
Download all results in tab-seperated text for 28 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8dfd:A (2.12) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 38575747
    2 8dfd:A (2.12) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 38575747
    3 8dfd:B (2.12) BS01 CLF 1.18.6.1 GO:0005524 ... P07329 38575747
    4 8dfd:B (2.12) BS02 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    5 8dfd:B (2.12) BS03 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    6 8dfd:C (2.12) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 38575747
    7 8dfd:C (2.12) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 38575747
    8 8dfd:D (2.12) BS01 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    9 8dfd:D (2.12) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 38575747
    10 8dfd:D (2.12) BS03 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    11 8dfd:E (2.12) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 38575747
    12 8dfd:E (2.12) BS02 ADP 1.18.6.1 GO:0005524 ... P00459 38575747
    13 8dfd:E (2.12) BS03 ALF 1.18.6.1 GO:0005524 ... P00459 38575747
    14 8dfd:E (2.12) BS04 MG 1.18.6.1 GO:0005524 ... P00459 38575747
    15 8dfd:E (2.12) BS05 ADP 1.18.6.1 GO:0005524 ... P00459 38575747
    16 8dfd:F (2.12) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 38575747
    17 8dfd:F (2.12) BS02 ADP 1.18.6.1 GO:0005524 ... P00459 38575747
    18 8dfd:F (2.12) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 38575747
    19 8dfd:F (2.12) BS04 ALF 1.18.6.1 GO:0005524 ... P00459 38575747
    20 8dfd:F (2.12) BS05 MG 1.18.6.1 GO:0005524 ... P00459 38575747
    21 8dfd:G (2.12) BS01 ADP 1.18.6.1 GO:0005524 ... P00459 38575747
    22 8dfd:G (2.12) BS02 ALF 1.18.6.1 GO:0005524 ... P00459 38575747
    23 8dfd:G (2.12) BS03 SF4 1.18.6.1 GO:0005524 ... P00459 38575747
    24 8dfd:G (2.12) BS04 ADP 1.18.6.1 GO:0005524 ... P00459 38575747
    25 8dfd:H (2.12) BS01 ADP 1.18.6.1 GO:0005524 ... P00459 38575747
    26 8dfd:H (2.12) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 38575747
    27 8dfd:H (2.12) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 38575747
    28 8dfd:H (2.12) BS04 ALF 1.18.6.1 GO:0005524 ... P00459 38575747
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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