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BioLiP
Download all results in tab-seperated text for 53 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8dba:A (3.5) BS01 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    2 8dba:A (3.5) BS02 MG 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    3 8dba:A (3.5) BS03 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    4 8dba:A (3.5) BS04 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    5 8dba:A (3.5) BS05 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    6 8dba:B (3.5) BS01 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    7 8dba:B (3.5) BS02 MG 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    8 8dba:B (3.5) BS03 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    9 8dba:B (3.5) BS04 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    10 8dba:B (3.5) BS05 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    11 8dba:C (3.5) BS01 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    12 8dba:C (3.5) BS02 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    13 8dba:C (3.5) BS03 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    14 8dba:C (3.5) BS04 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    15 8dba:D (3.5) BS01 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    16 8dba:D (3.5) BS02 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    17 8dba:D (3.5) BS03 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    18 8dba:D (3.5) BS04 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    19 8dba:E (3.5) BS01 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    20 8dba:E (3.5) BS02 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    21 8dba:E (3.5) BS03 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    22 8dba:E (3.5) BS04 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    23 8dba:F (3.5) BS01 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    24 8dba:F (3.5) BS02 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    25 8dba:F (3.5) BS03 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    26 8dba:F (3.5) BS04 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    27 8dba:G (3.5) BS01 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    28 8dba:G (3.5) BS02 MG 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    29 8dba:G (3.5) BS03 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    30 8dba:G (3.5) BS04 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    31 8dba:G (3.5) BS05 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    32 8dba:H (3.5) BS01 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    33 8dba:H (3.5) BS02 MG 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    34 8dba:H (3.5) BS03 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    35 8dba:H (3.5) BS04 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    36 8dba:H (3.5) BS05 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    37 8dba:I (3.5) BS01 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    38 8dba:I (3.5) BS02 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    39 8dba:I (3.5) BS03 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    40 8dba:I (3.5) BS04 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    41 8dba:J (3.5) BS01 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    42 8dba:J (3.5) BS02 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    43 8dba:J (3.5) BS03 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    44 8dba:J (3.5) BS04 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    45 8dba:K (3.5) BS01 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    46 8dba:K (3.5) BS02 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    47 8dba:K (3.5) BS03 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    48 8dba:K (3.5) BS04 MG 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    49 8dba:K (3.5) BS05 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    50 8dba:L (3.5) BS01 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    51 8dba:L (3.5) BS02 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    52 8dba:L (3.5) BS03 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    53 8dba:L (3.5) BS04 ADP 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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