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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8d8j:0 (3.8) BS01 rna 2.1.1.- GO:0003735 ... P36056 36482135
    2 8d8j:0 (3.8) BS02 SF4 2.1.1.- GO:0003735 ... P36056 36482135
    3 8d8j:2 (3.8) BS01 rna ? GO:0003735 ... P38783 36482135
    4 8d8j:5 (3.8) BS01 rna ? GO:0003735 ... P12686 36482135
    5 8d8j:6 (3.8) BS01 rna ? GO:0003735 ... P53292 36482135
    6 8d8j:D (3.8) BS01 rna ? GO:0003723 ... P27929 36482135
    7 8d8j:E (3.8) BS01 rna ? GO:0003723 ... P33759 36482135
    8 8d8j:F (3.8) BS01 rna ? GO:0003735 ... P28778 36482135
    9 8d8j:H (3.8) BS01 rna ? GO:0003735 ... Q03799 36482135
    10 8d8j:L (3.8) BS01 rna ? GO:0003735 ... P53732 36482135
    11 8d8j:O (3.8) BS01 rna ? GO:0003735 ... P21771 36482135
    12 8d8j:P (3.8) BS01 rna ? GO:0003735 ... Q02608 36482135
    13 8d8j:Q (3.8) BS01 rna ? GO:0003735 ... Q03246 36482135
    14 8d8j:R (3.8) BS01 rna ? GO:0003735 ... P40033 36482135
    15 8d8j:V (3.8) BS01 rna ? GO:0003735 ... P17558 36482135
    16 8d8j:d (3.8) BS01 rna ? GO:0000002 ... P48237 36482135
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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