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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 255 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8cqw:0 (3.05) BS01 rna N/A N/A A0A8H6BZJ3 N/A
    2 8cqw:0 (3.05) BS02 rna N/A N/A A0A8H6BZJ3 N/A
    3 8cqw:12 (3.05) BS01 rna N/A N/A A0A8H6C5X8 N/A
    4 8cqw:2 (3.05) BS01 rna N/A N/A A0A8H6F1C8 N/A
    5 8cqw:2 (3.05) BS02 rna N/A N/A A0A8H6F1C8 N/A
    6 8cqw:2 (3.05) BS03 MG N/A N/A A0A8H6F1C8 N/A
    7 8cqw:5 (3.05) BS01 rna N/A N/A A0A1D8PM41 N/A
    8 8cqw:6 (3.05) BS01 rna N/A N/A A0A8H6C444 N/A
    9 8cqw:7 (3.05) BS01 rna N/A N/A A0A8H6C4U1 N/A
    10 8cqw:7 (3.05) BS02 rna N/A N/A A0A8H6C4U1 N/A
    11 8cqw:8 (3.05) BS01 rna N/A N/A A0A8H6F6A1 N/A
    12 8cqw:8 (3.05) BS02 rna N/A N/A A0A8H6F6A1 N/A
    13 8cqw:9 (3.05) BS01 rna N/A N/A A0A8H6F3X2 N/A
    14 8cqw:9 (3.05) BS02 rna N/A N/A A0A8H6F3X2 N/A
    15 8cqw:AA (3.05) BS01 rna N/A N/A Q9P843 N/A
    16 8cqw:AB (3.05) BS01 rna N/A N/A A0A8H6BVY8 N/A
    17 8cqw:AB (3.05) BS02 MG N/A N/A A0A8H6BVY8 N/A
    18 8cqw:AC (3.05) BS01 rna N/A N/A A0A8H6F0G8 N/A
    19 8cqw:AD (3.05) BS01 rna N/A N/A A0A1D8PM75 N/A
    20 8cqw:AE (3.05) BS01 rna N/A N/A A0A8H6F1M1 N/A
    21 8cqw:AE (3.05) BS02 MG N/A N/A A0A8H6F1M1 N/A
    22 8cqw:AF (3.05) BS01 rna N/A N/A O94008 N/A
    23 8cqw:AF (3.05) BS02 MG N/A N/A O94008 N/A
    24 8cqw:AG (3.05) BS01 rna N/A N/A A0A8H6BW57 N/A
    25 8cqw:AG (3.05) BS02 MG N/A N/A A0A8H6BW57 N/A
    26 8cqw:AG (3.05) BS03 MG N/A N/A A0A8H6BW57 N/A
    27 8cqw:AH (3.05) BS01 rna N/A N/A A0A8H6F171 N/A
    28 8cqw:AH (3.05) BS02 ZN N/A N/A A0A8H6F171 N/A
    29 8cqw:AH (3.05) BS03 MG N/A N/A A0A8H6F171 N/A
    30 8cqw:AI (3.05) BS01 rna N/A N/A A0A8H6F6B7 N/A
    31 8cqw:AI (3.05) BS02 rna N/A N/A A0A8H6F6B7 N/A
    32 8cqw:AJ (3.05) BS01 rna N/A N/A P47834 N/A
    33 8cqw:AK (3.05) BS01 rna N/A N/A A0A1D8PF45 N/A
    34 8cqw:AK (3.05) BS02 rna N/A N/A A0A1D8PF45 N/A
    35 8cqw:AK (3.05) BS03 ZN N/A N/A A0A1D8PF45 N/A
    36 8cqw:AL (3.05) BS01 rna N/A N/A A0A1D8PG16 N/A
    37 8cqw:AM (3.05) BS01 rna N/A N/A Q96W55 N/A
    38 8cqw:AM (3.05) BS02 rna N/A N/A Q96W55 N/A
    39 8cqw:AM (3.05) BS03 MG N/A N/A Q96W55 N/A
    40 8cqw:AN (3.05) BS01 rna N/A N/A A0A1D8PL68 N/A
    41 8cqw:AN (3.05) BS02 ZN N/A N/A A0A1D8PL68 N/A
    42 8cqw:AP (3.05) BS01 rna N/A N/A A0A8H6BR69 N/A
    43 8cqw:AP (3.05) BS02 3K5 N/A N/A A0A8H6BR69 N/A
    44 8cqw:AP (3.05) BS03 ZN N/A N/A A0A8H6BR69 N/A
    45 8cqw:AP (3.05) BS04 MG N/A N/A A0A8H6BR69 N/A
    46 8cqw:AQ (3.05) BS01 rna N/A N/A A0A1D8PP14 N/A
    47 8cqw:AQ (3.05) BS02 ZN N/A N/A A0A1D8PP14 N/A
    48 8cqw:AR (3.05) BS01 rna N/A N/A A0A8H6C3E7 N/A
    49 8cqw:AR (3.05) BS02 MG N/A N/A A0A8H6C3E7 N/A
    50 8cqw:AW (3.05) BS01 rna N/A N/A A0A8H6F1X9 N/A
    51 8cqw:AW (3.05) BS02 MG N/A N/A A0A8H6F1X9 N/A
    52 8cqw:AW (3.05) BS03 MG N/A N/A A0A8H6F1X9 N/A
    53 8cqw:AX (3.05) BS01 rna N/A N/A Q59LS1 N/A
    54 8cqw:AY (3.05) BS01 rna N/A N/A A0A8H6F4H4 N/A
    55 8cqw:AY (3.05) BS02 rna N/A N/A A0A8H6F4H4 N/A
    56 8cqw:AZ (3.05) BS01 rna N/A N/A G1UAA6 N/A
    57 8cqw:AZ (3.05) BS02 rna N/A N/A G1UAA6 N/A
    58 8cqw:AZ (3.05) BS03 MG N/A N/A G1UAA6 N/A
    59 8cqw:BA (3.05) BS01 rna N/A N/A Q9P834 N/A
    60 8cqw:BB (3.05) BS01 rna N/A N/A A0A8H6BVN2 N/A
    61 8cqw:BB (3.05) BS02 rna N/A N/A A0A8H6BVN2 N/A
    62 8cqw:BC (3.05) BS01 rna N/A N/A A0A8H6C337 N/A
    63 8cqw:BC (3.05) BS02 rna N/A N/A A0A8H6C337 N/A
    64 8cqw:BD (3.05) BS01 rna N/A N/A A0A8H6C3N3 N/A
    65 8cqw:BE (3.05) BS01 rna N/A N/A Q5AIB8 N/A
    66 8cqw:BE (3.05) BS02 rna N/A N/A Q5AIB8 N/A
    67 8cqw:BE (3.05) BS03 MG N/A N/A Q5AIB8 N/A
    68 8cqw:BF (3.05) BS01 rna N/A N/A A0A8H6F1S5 N/A
    69 8cqw:BF (3.05) BS02 rna N/A N/A A0A8H6F1S5 N/A
    70 8cqw:BG (3.05) BS01 rna N/A N/A A0A8H6F5V7 N/A
    71 8cqw:BG (3.05) BS02 rna N/A N/A A0A8H6F5V7 N/A
    72 8cqw:BH (3.05) BS01 rna N/A N/A A0A8H6F332 N/A
    73 8cqw:BI (3.05) BS01 rna N/A N/A Q5A6R1 N/A
    74 8cqw:BI (3.05) BS02 rna N/A N/A Q5A6R1 N/A
    75 8cqw:BJ (3.05) BS01 rna N/A N/A A0A8H6BZ56 N/A
    76 8cqw:BJ (3.05) BS02 MG N/A N/A A0A8H6BZ56 N/A
    77 8cqw:BK (3.05) BS01 rna N/A N/A A0A8H6BUG0 N/A
    78 8cqw:BK (3.05) BS02 rna N/A N/A A0A8H6BUG0 N/A
    79 8cqw:BL (3.05) BS01 rna N/A N/A A0A8H6C4Y1 N/A
    80 8cqw:BM (3.05) BS01 rna N/A N/A A0A1D8PK40 N/A
    81 8cqw:BM (3.05) BS02 rna N/A N/A A0A1D8PK40 N/A
    82 8cqw:BN (3.05) BS01 rna N/A N/A A0A8H6BZJ3 N/A
    83 8cqw:BN (3.05) BS02 rna N/A N/A A0A8H6BZJ3 N/A
    84 8cqw:BO (3.05) BS01 rna N/A N/A A0A8H6F1C8 N/A
    85 8cqw:BO (3.05) BS02 rna N/A N/A A0A8H6F1C8 N/A
    86 8cqw:BP (3.05) BS01 rna N/A N/A A0A1D8PM41 N/A
    87 8cqw:BQ (3.05) BS01 rna N/A N/A A0A8H6C444 N/A
    88 8cqw:BQ (3.05) BS02 MG N/A N/A A0A8H6C444 N/A
    89 8cqw:BR (3.05) BS01 rna N/A N/A A0A8H6C4U1 N/A
    90 8cqw:BR (3.05) BS02 rna N/A N/A A0A8H6C4U1 N/A
    91 8cqw:BS (3.05) BS01 rna N/A N/A A0A8H6F6A1 N/A
    92 8cqw:BS (3.05) BS02 rna N/A N/A A0A8H6F6A1 N/A
    93 8cqw:BT (3.05) BS01 rna N/A N/A A0A8H6F3X2 N/A
    94 8cqw:BT (3.05) BS02 rna N/A N/A A0A8H6F3X2 N/A
    95 8cqw:BU (3.05) BS01 rna N/A N/A Q9P843 N/A
    96 8cqw:BV (3.05) BS01 rna N/A N/A A0A8H6BVY8 N/A
    97 8cqw:BV (3.05) BS02 MG N/A N/A A0A8H6BVY8 N/A
    98 8cqw:BW (3.05) BS01 rna N/A N/A A0A8H6F0G8 N/A
    99 8cqw:BX (3.05) BS01 rna N/A N/A A0A1D8PM75 N/A
    100 8cqw:BY (3.05) BS01 rna N/A N/A A0A8H6F1M1 N/A
    101 8cqw:BZ (3.05) BS01 rna N/A N/A O94008 N/A
    102 8cqw:BZ (3.05) BS02 MG N/A N/A O94008 N/A
    103 8cqw:BZ (3.05) BS03 MG N/A N/A O94008 N/A
    104 8cqw:C (3.05) BS01 rna N/A N/A A0A8H6C395 N/A
    105 8cqw:CA (3.05) BS01 rna N/A N/A A0A8H6BW57 N/A
    106 8cqw:CB (3.05) BS01 rna N/A N/A A0A8H6F171 N/A
    107 8cqw:CC (3.05) BS01 rna N/A N/A A0A8H6F6B7 N/A
    108 8cqw:CC (3.05) BS02 rna N/A N/A A0A8H6F6B7 N/A
    109 8cqw:CD (3.05) BS01 rna N/A N/A P47834 N/A
    110 8cqw:CE (3.05) BS01 rna N/A N/A A0A1D8PF45 N/A
    111 8cqw:CE (3.05) BS02 rna N/A N/A A0A1D8PF45 N/A
    112 8cqw:CE (3.05) BS03 ZN N/A N/A A0A1D8PF45 N/A
    113 8cqw:CF (3.05) BS01 rna N/A N/A A0A1D8PG16 N/A
    114 8cqw:CG (3.05) BS01 rna N/A N/A Q96W55 N/A
    115 8cqw:CG (3.05) BS02 rna N/A N/A Q96W55 N/A
    116 8cqw:CH (3.05) BS01 rna N/A N/A A0A1D8PL68 N/A
    117 8cqw:CH (3.05) BS02 ZN N/A N/A A0A1D8PL68 N/A
    118 8cqw:CJ (3.05) BS01 rna N/A N/A A0A8H6BR69 N/A
    119 8cqw:CJ (3.05) BS02 3K5 N/A N/A A0A8H6BR69 N/A
    120 8cqw:CJ (3.05) BS03 ZN N/A N/A A0A8H6BR69 N/A
    121 8cqw:CK (3.05) BS01 rna N/A N/A A0A1D8PP14 N/A
    122 8cqw:CK (3.05) BS02 ZN N/A N/A A0A1D8PP14 N/A
    123 8cqw:CL (3.05) BS01 rna N/A N/A A0A1D8PK71 N/A
    124 8cqw:CL (3.05) BS02 rna N/A N/A A0A1D8PK71 N/A
    125 8cqw:CN (3.05) BS01 rna N/A N/A A0A8H6C395 N/A
    126 8cqw:CO (3.05) BS01 rna N/A N/A A0A8H6C387 N/A
    127 8cqw:CP (3.05) BS01 rna N/A N/A A0A8H6BZ90 N/A
    128 8cqw:CQ (3.05) BS01 rna N/A N/A A0A8H6BYS1 N/A
    129 8cqw:CR (3.05) BS01 rna N/A N/A A0A1D8PCI6 N/A
    130 8cqw:CS (3.05) BS01 rna N/A N/A A0A8H6BS29 N/A
    131 8cqw:CT (3.05) BS01 rna N/A N/A A0A8H6BZ37 N/A
    132 8cqw:CU (3.05) BS01 rna N/A N/A A0A8H6C655 N/A
    133 8cqw:CV (3.05) BS01 rna N/A N/A A0A8H6F0S0 N/A
    134 8cqw:CV (3.05) BS02 rna N/A N/A A0A8H6F0S0 N/A
    135 8cqw:CW (3.05) BS01 rna N/A N/A A0A8H6F1X2 N/A
    136 8cqw:CX (3.05) BS01 rna N/A N/A A0A8H6BWQ8 N/A
    137 8cqw:CY (3.05) BS01 rna N/A N/A A0A1D8PN83 N/A
    138 8cqw:CZ (3.05) BS01 rna N/A N/A A0A8H6C3A1 N/A
    139 8cqw:D (3.05) BS01 rna N/A N/A A0A8H6C387 N/A
    140 8cqw:DA (3.05) BS01 rna N/A N/A A0A8H6F4G0 N/A
    141 8cqw:DB (3.05) BS01 rna N/A N/A A0A8H6F0V4 N/A
    142 8cqw:DB (3.05) BS02 MG N/A N/A A0A8H6F0V4 N/A
    143 8cqw:DC (3.05) BS01 rna N/A N/A A0A1D8PK22 N/A
    144 8cqw:DC (3.05) BS02 MG N/A N/A A0A1D8PK22 N/A
    145 8cqw:DD (3.05) BS01 rna N/A N/A O94017 N/A
    146 8cqw:DE (3.05) BS01 rna N/A N/A A0A8H6BTR7 N/A
    147 8cqw:DF (3.05) BS01 rna N/A N/A A0A8H6F3Y8 N/A
    148 8cqw:DG (3.05) BS01 rna N/A N/A A0A8H6C5L4 N/A
    149 8cqw:DG (3.05) BS02 MG N/A N/A A0A8H6C5L4 N/A
    150 8cqw:DH (3.05) BS01 rna N/A N/A A0A8H6BYJ9 N/A
    151 8cqw:DI (3.05) BS01 rna N/A N/A Q9P844 N/A
    152 8cqw:DJ (3.05) BS01 rna N/A N/A A0A8H6F0N4 N/A
    153 8cqw:DK (3.05) BS01 rna N/A N/A A0A8H6F0V0 N/A
    154 8cqw:DL (3.05) BS01 rna N/A N/A A0A8H6C3K1 N/A
    155 8cqw:DM (3.05) BS01 rna N/A N/A A0A8H6EZQ8 N/A
    156 8cqw:DN (3.05) BS01 rna N/A N/A A0A8H6BTS1 N/A
    157 8cqw:DN (3.05) BS02 ZN N/A N/A A0A8H6BTS1 N/A
    158 8cqw:DO (3.05) BS01 rna N/A N/A A0A8H6BWE6 N/A
    159 8cqw:DP (3.05) BS01 rna N/A N/A A0A8H6C0A5 N/A
    160 8cqw:DQ (3.05) BS01 rna N/A N/A A0A1D8PTR4 N/A
    161 8cqw:DQ (3.05) BS02 ZN N/A N/A A0A1D8PTR4 N/A
    162 8cqw:DR (3.05) BS01 rna N/A N/A A0A1D8PSK2 N/A
    163 8cqw:DS (3.05) BS01 rna N/A N/A Q5A109 N/A
    164 8cqw:DS (3.05) BS02 ZN N/A N/A Q5A109 N/A
    165 8cqw:DT (3.05) BS01 rna N/A N/A A0A8H6C3E7 N/A
    166 8cqw:E (3.05) BS01 rna N/A N/A A0A8H6BZ90 N/A
    167 8cqw:E (3.05) BS02 MG N/A N/A A0A8H6BZ90 N/A
    168 8cqw:F (3.05) BS01 rna N/A N/A A0A8H6BYS1 N/A
    169 8cqw:G (3.05) BS01 rna N/A N/A A0A1D8PCI6 N/A
    170 8cqw:G (3.05) BS02 MG N/A N/A A0A1D8PCI6 N/A
    171 8cqw:H (3.05) BS01 rna N/A N/A A0A8H6BS29 N/A
    172 8cqw:H (3.05) BS02 MG N/A N/A A0A8H6BS29 N/A
    173 8cqw:I (3.05) BS01 rna N/A N/A A0A8H6BZ37 N/A
    174 8cqw:J (3.05) BS01 rna N/A N/A A0A8H6C655 N/A
    175 8cqw:J (3.05) BS02 MG N/A N/A A0A8H6C655 N/A
    176 8cqw:K (3.05) BS01 rna N/A N/A A0A8H6F0S0 N/A
    177 8cqw:K (3.05) BS02 rna N/A N/A A0A8H6F0S0 N/A
    178 8cqw:K (3.05) BS03 MG N/A N/A A0A8H6F0S0 N/A
    179 8cqw:L (3.05) BS01 rna N/A N/A A0A8H6F1X2 N/A
    180 8cqw:L1 (3.05) BS01 rna N/A N/A A0A8H6F4E7 N/A
    181 8cqw:M (3.05) BS01 rna N/A N/A A0A8H6BWQ8 N/A
    182 8cqw:N (3.05) BS01 rna N/A N/A A0A1D8PN83 N/A
    183 8cqw:O (3.05) BS01 rna N/A N/A A0A8H6C3A1 N/A
    184 8cqw:P (3.05) BS01 rna N/A N/A A0A8H6F4G0 N/A
    185 8cqw:P0 (3.05) BS01 rna N/A N/A G1UA71 N/A
    186 8cqw:Q (3.05) BS01 rna N/A N/A A0A8H6F0V4 N/A
    187 8cqw:Q (3.05) BS02 MG N/A N/A A0A8H6F0V4 N/A
    188 8cqw:R (3.05) BS01 rna N/A N/A A0A1D8PK22 N/A
    189 8cqw:R (3.05) BS02 rna N/A N/A A0A1D8PK22 N/A
    190 8cqw:R (3.05) BS03 MG N/A N/A A0A1D8PK22 N/A
    191 8cqw:S (3.05) BS01 rna N/A N/A O94017 N/A
    192 8cqw:T (3.05) BS01 rna N/A N/A A0A8H6BTR7 N/A
    193 8cqw:U (3.05) BS01 rna N/A N/A A0A8H6F3Y8 N/A
    194 8cqw:V (3.05) BS01 rna N/A N/A A0A8H6C5L4 N/A
    195 8cqw:W (3.05) BS01 rna N/A N/A A0A8H6BYJ9 N/A
    196 8cqw:X (3.05) BS01 rna N/A N/A Q9P844 N/A
    197 8cqw:Y (3.05) BS01 rna N/A N/A A0A8H6F0N4 N/A
    198 8cqw:Y (3.05) BS02 MG N/A N/A A0A8H6F0N4 N/A
    199 8cqw:Z (3.05) BS01 rna N/A N/A A0A8H6F0V0 N/A
    200 8cqw:Z (3.05) BS02 MG N/A N/A A0A8H6F0V0 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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