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BioLiP
Download all results in tab-seperated text for 110 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8cf5:0 (2.71) BS01 rna ? GO:0000462 ... P0CX31 38030725
    2 8cf5:1 (2.71) BS01 rna ? GO:0002181 ... Q3E792 38030725
    3 8cf5:2 (2.71) BS01 rna ? GO:0003735 ... N/A 38030725
    4 8cf5:2 (2.71) BS02 ZN ? GO:0003735 ... N/A 38030725
    5 8cf5:3 (2.71) BS01 rna ? GO:0000028 ... P35997 38030725
    6 8cf5:4 (2.71) BS01 rna ? GO:0000028 ... Q3E7X9 38030725
    7 8cf5:5 (2.71) BS01 rna ? GO:0003735 ... N/A 38030725
    8 8cf5:5 (2.71) BS02 ZN ? GO:0003735 ... N/A 38030725
    9 8cf5:6 (2.71) BS01 rna ? GO:0002181 ... P0CX33 38030725
    10 8cf5:7 (2.71) BS01 rna ? GO:0001965 ... P38011 38030725
    11 8cf5:8 (2.71) BS01 rna ? GO:0003735 ... N/A 38030725
    12 8cf5:A (2.71) BS01 rna ? GO:0000470 ... P26784 38030725
    13 8cf5:Aa (2.71) BS01 rna ? GO:0003924 ... N/A 38030725
    14 8cf5:Aa (2.71) BS02 rna ? GO:0003924 ... N/A 38030725
    15 8cf5:Aa (2.71) BS03 rna ? GO:0003924 ... N/A 38030725
    16 8cf5:Aa (2.71) BS04 GTP ? GO:0003924 ... N/A 38030725
    17 8cf5:Aa (2.71) BS05 SO1 ? GO:0003924 ... N/A 38030725
    18 8cf5:Aa (2.71) BS06 MG ? GO:0003924 ... N/A 38030725
    19 8cf5:B (2.71) BS01 rna ? GO:0000448 ... P05740 38030725
    20 8cf5:B (2.71) BS02 rna ? GO:0000448 ... P05740 38030725
    21 8cf5:C (2.71) BS01 rna ? GO:0002181 ... P0CX49 38030725
    22 8cf5:D (2.71) BS01 rna ? GO:0002181 ... P0CX82 38030725
    23 8cf5:D (2.71) BS02 rna ? GO:0002181 ... P0CX82 38030725
    24 8cf5:DD (2.71) BS01 rna ? GO:0000027 ... P05317 38030725
    25 8cf5:E (2.71) BS01 rna ? GO:0002181 ... P0CX23 38030725
    26 8cf5:E (2.71) BS02 rna ? GO:0002181 ... P0CX23 38030725
    27 8cf5:EE (2.71) BS01 rna ? GO:0002181 ... P0CX45 38030725
    28 8cf5:EE (2.71) BS02 rna ? GO:0002181 ... P0CX45 38030725
    29 8cf5:Ee (2.71) BS01 rna ? GO:0000027 ... P0CX53 38030725
    30 8cf5:F (2.71) BS01 rna ? GO:0002181 ... Q02753 38030725
    31 8cf5:F (2.71) BS02 rna ? GO:0002181 ... Q02753 38030725
    32 8cf5:FF (2.71) BS01 rna ? GO:0000027 ... P14126 38030725
    33 8cf5:G (2.71) BS01 rna ? GO:0002181 ... P05749 38030725
    34 8cf5:GG (2.71) BS01 rna ? GO:0002181 ... P10664 38030725
    35 8cf5:GG (2.71) BS02 rna ? GO:0002181 ... P10664 38030725
    36 8cf5:H (2.71) BS01 rna ? GO:0002181 ... P0CX41 38030725
    37 8cf5:HH (2.71) BS01 rna ? GO:0000027 ... P26321 38030725
    38 8cf5:HH (2.71) BS02 rna ? GO:0000027 ... P26321 38030725
    39 8cf5:I (2.71) BS01 rna ? GO:0002181 ... P04449 38030725
    40 8cf5:II (2.71) BS01 rna ? GO:0000027 ... Q02326 38030725
    41 8cf5:J (2.71) BS01 rna ? GO:0000027 ... P04456 38030725
    42 8cf5:J (2.71) BS02 rna ? GO:0000027 ... P04456 38030725
    43 8cf5:JJ (2.71) BS01 rna ? GO:0000463 ... P05737 38030725
    44 8cf5:JJ (2.71) BS02 rna ? GO:0000463 ... P05737 38030725
    45 8cf5:K (2.71) BS01 rna ? GO:0002181 ... P05743 38030725
    46 8cf5:K (2.71) BS02 rna ? GO:0002181 ... P05743 38030725
    47 8cf5:KK (2.71) BS01 rna ? GO:0000470 ... P17076 38030725
    48 8cf5:KK (2.71) BS02 rna ? GO:0000470 ... P17076 38030725
    49 8cf5:L (2.71) BS01 rna ? GO:0002181 ... P0C2H6 38030725
    50 8cf5:LL (2.71) BS01 rna ? GO:0003735 ... N/A 38030725
    51 8cf5:M (2.71) BS01 rna ? GO:0002181 ... P02406 38030725
    52 8cf5:MM (2.71) BS01 rna ? GO:0000027 ... P41805 38030725
    53 8cf5:MM (2.71) BS02 rna ? GO:0000027 ... P41805 38030725
    54 8cf5:MM (2.71) BS03 rna ? GO:0000027 ... P41805 38030725
    55 8cf5:N (2.71) BS01 rna ? GO:0002181 ... P05747 38030725
    56 8cf5:NN (2.71) BS01 rna ? GO:0000027 ... P0C0W9 38030725
    57 8cf5:NN (2.71) BS02 rna ? GO:0000027 ... P0C0W9 38030725
    58 8cf5:O (2.71) BS01 rna ? GO:0002181 ... P14120 38030725
    59 8cf5:OO (2.71) BS01 rna ? GO:0002181 ... Q12690 38030725
    60 8cf5:OO (2.71) BS02 rna ? GO:0002181 ... Q12690 38030725
    61 8cf5:P (2.71) BS01 rna ? GO:0002181 ... P0C2H8 38030725
    62 8cf5:PP (2.71) BS01 rna ? GO:0000027 ... P36105 38030725
    63 8cf5:Q (2.71) BS01 rna ? GO:0002181 ... P38061 38030725
    64 8cf5:QQ (2.71) BS01 rna ? GO:0002181 ... P05748 38030725
    65 8cf5:QQ (2.71) BS02 rna ? GO:0002181 ... P05748 38030725
    66 8cf5:R (2.71) BS01 rna ? GO:0000027 ... P05744 38030725
    67 8cf5:S (2.71) BS01 rna ? GO:0002181 ... P87262 38030725
    68 8cf5:S (2.71) BS02 ZN ? GO:0002181 ... P87262 38030725
    69 8cf5:T (2.71) BS01 rna ? GO:0000463 ... P0CX84 38030725
    70 8cf5:T (2.71) BS02 rna ? GO:0000463 ... P0CX84 38030725
    71 8cf5:U (2.71) BS01 rna ? GO:0002181 ... P05745 38030725
    72 8cf5:V (2.71) BS01 rna ? GO:0000448 ... P49166 38030725
    73 8cf5:V (2.71) BS02 rna ? GO:0000448 ... P49166 38030725
    74 8cf5:V (2.71) BS03 ZN ? GO:0000448 ... P49166 38030725
    75 8cf5:W (2.71) BS01 rna ? GO:0002181 ... P49167 38030725
    76 8cf5:X (2.71) BS01 rna ? GO:0002181 ... P04650 38030725
    77 8cf5:X (2.71) BS02 rna ? GO:0002181 ... P04650 38030725
    78 8cf5:Y (2.71) BS01 rna ? GO:0000027 ... P0CH08 38030725
    79 8cf5:Y (2.71) BS02 ZN ? GO:0000027 ... P0CH08 38030725
    80 8cf5:a (2.71) BS01 rna ? GO:0002181 ... P0CX27 38030725
    81 8cf5:a (2.71) BS02 rna ? GO:0002181 ... P0CX27 38030725
    82 8cf5:a (2.71) BS03 ZN ? GO:0002181 ... P0CX27 38030725
    83 8cf5:b (2.71) BS01 rna ? GO:0002181 ... P0CX25 38030725
    84 8cf5:b (2.71) BS02 rna ? GO:0002181 ... P0CX25 38030725
    85 8cf5:b (2.71) BS03 ZN ? GO:0002181 ... P0CX25 38030725
    86 8cf5:d (2.71) BS01 rna ? GO:0000028 ... P32905 38030725
    87 8cf5:e (2.71) BS01 rna ? GO:0000462 ... P33442 38030725
    88 8cf5:e (2.71) BS02 rna ? GO:0000462 ... P33442 38030725
    89 8cf5:f (2.71) BS01 rna ? GO:0000054 ... P25443 38030725
    90 8cf5:g (2.71) BS01 rna ? GO:0003723 ... N/A 38030725
    91 8cf5:h (2.71) BS01 rna ? GO:0002181 ... P0CX35 38030725
    92 8cf5:i (2.71) BS01 rna ? GO:0000028 ... P26783 38030725
    93 8cf5:j (2.71) BS01 rna ? GO:0000462 ... P0CX37 38030725
    94 8cf5:k (2.71) BS01 rna ? GO:0002181 ... P26786 38030725
    95 8cf5:l (2.71) BS01 rna ? GO:0000462 ... P0CX40 38030725
    96 8cf5:m (2.71) BS01 rna ? GO:0000462 ... O13516 38030725
    97 8cf5:n (2.71) BS01 rna ? GO:0000054 ... Q08745 38030725
    98 8cf5:o (2.71) BS01 rna ? GO:0000028 ... P0CX47 38030725
    99 8cf5:p (2.71) BS01 rna ? GO:0000462 ... P05756 38030725
    100 8cf5:q (2.71) BS01 rna ? GO:0000028 ... P06367 38030725
    101 8cf5:r (2.71) BS01 rna ? GO:0000028 ... Q01855 38030725
    102 8cf5:s (2.71) BS01 rna ? GO:0000462 ... P0CX51 38030725
    103 8cf5:t (2.71) BS01 rna ? GO:0000028 ... P02407 38030725
    104 8cf5:u (2.71) BS01 rna ? GO:0000054 ... P0CX55 38030725
    105 8cf5:v (2.71) BS01 rna ? GO:0000028 ... P07280 38030725
    106 8cf5:w (2.71) BS01 rna ? GO:0003723 ... N/A 38030725
    107 8cf5:x (2.71) BS01 rna ? GO:0000447 ... P0C0V8 38030725
    108 8cf5:y (2.71) BS01 rna ? GO:0002181 ... P0C0W1 38030725
    109 8cf5:z (2.71) BS01 rna ? GO:0000462 ... P0CX29 38030725
    110 8cf5:z (2.71) BS02 rna ? GO:0000462 ... P0CX29 38030725
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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