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BioLiP
Download all results in tab-seperated text for 47 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8cah:A (3.0) BS01 rna ? GO:0000054 ... P05750 37169754
    2 8cah:B (3.0) BS01 rna ? GO:0000028 ... P26783 37169754
    3 8cah:B (3.0) BS02 MG ? GO:0000028 ... P26783 37169754
    4 8cah:C (3.0) BS01 rna ? GO:0000054 ... Q08745 37169754
    5 8cah:D (3.0) BS01 rna ? GO:0000028 ... P48589 37169754
    6 8cah:E (3.0) BS01 rna ? GO:0000028 ... Q01855 37169754
    7 8cah:F (3.0) BS01 rna ? GO:0000462 ... P0CX51 37169754
    8 8cah:G (3.0) BS01 rna ? GO:0003674 ... P38747 37169754
    9 8cah:H (3.0) BS01 rna ? GO:0000028 ... P02407 37169754
    10 8cah:I (3.0) BS01 rna ? GO:0000054 ... P0CX55 37169754
    11 8cah:J (3.0) BS01 rna ? GO:0000028 ... P07280 37169754
    12 8cah:K (3.0) BS01 rna ? GO:0000462 ... P38701 37169754
    13 8cah:L (3.0) BS01 rna ? GO:0002181 ... Q3E792 37169754
    14 8cah:M (3.0) BS01 rna ? GO:0002181 ... P41057 37169754
    15 8cah:M (3.0) BS02 ZN ? GO:0002181 ... P41057 37169754
    16 8cah:N (3.0) BS01 rna ? GO:0003735 ... P05759 37169754
    17 8cah:O (3.0) BS01 rna ? GO:0001965 ... P38011 37169754
    18 8cah:P (3.0) BS01 rna ? GO:0000028 ... P32905 37169754
    19 8cah:Q (3.0) BS01 rna ? GO:0000462 ... P33442 37169754
    20 8cah:R (3.0) BS01 rna ? GO:0000054 ... P25443 37169754
    21 8cah:S (3.0) BS01 rna ? GO:0002181 ... P0CX36 37169754
    22 8cah:S (3.0) BS02 MG ? GO:0002181 ... P0CX36 37169754
    23 8cah:T (3.0) BS01 rna ? GO:0000462 ... P0CX38 37169754
    24 8cah:U (3.0) BS01 rna ? GO:0002181 ... P26786 37169754
    25 8cah:V (3.0) BS01 rna ? GO:0000462 ... P0CX39 37169754
    26 8cah:W (3.0) BS01 rna ? GO:0000462 ... O13516 37169754
    27 8cah:X (3.0) BS01 rna ? GO:0000028 ... P0CX47 37169754
    28 8cah:Y (3.0) BS01 rna ? GO:0000462 ... P05756 37169754
    29 8cah:Z (3.0) BS01 rna ? GO:0000028 ... P06367 37169754
    30 8cah:a (3.0) BS01 rna ? GO:0000447 ... P0C0V8 37169754
    31 8cah:b (3.0) BS01 rna ? GO:0002181 ... P0C0W1 37169754
    32 8cah:c (3.0) BS01 rna ? GO:0000462 ... P0CX29 37169754
    33 8cah:d (3.0) BS01 rna ? GO:0000462 ... P0CX31 37169754
    34 8cah:e (3.0) BS01 rna ? GO:0000054 ... P39938 37169754
    35 8cah:f (3.0) BS01 rna ? GO:0000028 ... P35997 37169754
    36 8cah:g (3.0) BS01 rna ? GO:0002181 ... P0CX33 37169754
    37 8cah:h (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 37169754
    38 8cah:i (3.0) BS01 rna ? GO:0001677 ... P38912 37169754
    39 8cah:m (3.0) BS01 rna ? GO:0001731 ... P32911 37169754
    40 8cah:p (3.0) BS01 rna ? GO:0001732 ... P06103 37169754
    41 8cah:q (3.0) BS01 rna ? GO:0001732 ... P32497 37169754
    42 8cah:x (3.0) BS01 rna ? GO:0000054 ... Q03195 37169754
    43 8cah:x (3.0) BS02 SF4 ? GO:0000054 ... Q03195 37169754
    44 8cah:x (3.0) BS03 SF4 ? GO:0000054 ... Q03195 37169754
    45 8cah:x (3.0) BS04 ADP ? GO:0000054 ... Q03195 37169754
    46 8cah:x (3.0) BS05 MG ? GO:0000054 ... Q03195 37169754
    47 8cah:z (3.0) BS01 rna ? GO:0000184 ... Q05775 37169754
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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