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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8c96:0 (4.43) BS01 rna ? GO:0000027 ... P0A7N4 36797249
    2 8c96:2 (4.43) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    3 8c96:D (4.43) BS01 rna ? GO:0000027 ... P60438 36797249
    4 8c96:E (4.43) BS01 rna ? GO:0001070 ... P60723 36797249
    5 8c96:J (4.43) BS01 rna ? GO:0002181 ... P0AA10 36797249
    6 8c96:K (4.43) BS01 rna ? GO:0002181 ... P0ADY3 36797249
    7 8c96:L (4.43) BS01 rna ? GO:0002181 ... P02413 36797249
    8 8c96:N (4.43) BS01 rna ? GO:0000027 ... P0AG44 36797249
    9 8c96:P (4.43) BS01 rna ? GO:0000027 ... P0A7K6 36797249
    10 8c96:Q (4.43) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    11 8c96:R (4.43) BS01 rna ? GO:0002181 ... P0AG48 36797249
    12 8c96:S (4.43) BS01 rna ? GO:0002181 ... P61175 36797249
    13 8c96:U (4.43) BS01 rna ? GO:0000027 ... P60624 36797249
    14 8c96:Y (4.43) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    15 8c96:Z (4.43) BS01 rna ? GO:0000027 ... P0AG51 36797249
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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