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BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8c8z:0 (3.12) BS01 rna ? GO:0000027 ... P0A7N4 36797249
    2 8c8z:2 (3.12) BS01 rna ? GO:0002181 ... P0A7P5 36797249
    3 8c8z:D (3.12) BS01 rna ? GO:0000027 ... P60438 36797249
    4 8c8z:E (3.12) BS01 rna ? GO:0001070 ... P60723 36797249
    5 8c8z:F (3.12) BS01 rna ? GO:0000027 ... P62399 36797249
    6 8c8z:F (3.12) BS02 rna ? GO:0000027 ... P62399 36797249
    7 8c8z:H (3.12) BS01 rna ? GO:0002181 ... P0A7R1 36797249
    8 8c8z:J (3.12) BS01 rna ? GO:0002181 ... P0AA10 36797249
    9 8c8z:K (3.12) BS01 rna ? GO:0002181 ... P0ADY3 36797249
    10 8c8z:L (3.12) BS01 rna ? GO:0002181 ... P02413 36797249
    11 8c8z:N (3.12) BS01 rna ? GO:0000027 ... P0AG44 36797249
    12 8c8z:O (3.12) BS01 rna ? GO:0002181 ... P0C018 36797249
    13 8c8z:O (3.12) BS02 rna ? GO:0002181 ... P0C018 36797249
    14 8c8z:P (3.12) BS01 rna ? GO:0000027 ... P0A7K6 36797249
    15 8c8z:Q (3.12) BS01 rna ? GO:0000027 ... P0A7L3 36797249
    16 8c8z:R (3.12) BS01 rna ? GO:0002181 ... P0AG48 36797249
    17 8c8z:S (3.12) BS01 rna ? GO:0002181 ... P61175 36797249
    18 8c8z:T (3.12) BS01 rna ? GO:0000027 ... P0ADZ0 36797249
    19 8c8z:U (3.12) BS01 rna ? GO:0000027 ... P60624 36797249
    20 8c8z:V (3.12) BS01 rna ? GO:0000027 ... P68919 36797249
    21 8c8z:W (3.12) BS01 rna ? GO:0000027 ... P0A7L8 36797249
    22 8c8z:W (3.12) BS02 rna ? GO:0000027 ... P0A7L8 36797249
    23 8c8z:X (3.12) BS01 rna ? GO:0000027 ... P0A7M2 36797249
    24 8c8z:Y (3.12) BS01 rna ? GO:0000027 ... P0A7M6 36797249
    25 8c8z:Z (3.12) BS01 rna ? GO:0000027 ... P0AG51 36797249
    26 8c8z:Z (3.12) BS02 rna ? GO:0000027 ... P0AG51 36797249
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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