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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8byv:A (2.89) BS01 rna ? GO:0005737 ... Q2G2Q4 36768442
    2 8byv:b (2.89) BS01 rna ? GO:0003735 ... Q2FZ25 36768442
    3 8byv:c (2.89) BS01 rna ? GO:0003676 ... Q2FW12 36768442
    4 8byv:d (2.89) BS01 rna ? GO:0003723 ... Q2FXK6 36768442
    5 8byv:e (2.89) BS01 rna ? GO:0003723 ... Q2FW23 36768442
    6 8byv:f (2.89) BS01 rna ? GO:0003735 ... Q2G113 36768442
    7 8byv:g (2.89) BS01 rna ? GO:0000028 ... P48940 36768442
    8 8byv:h (2.89) BS01 rna ? GO:0003735 ... Q2FW20 36768442
    9 8byv:i (2.89) BS01 rna ? GO:0003723 ... Q2FW39 36768442
    10 8byv:j (2.89) BS01 rna ? GO:0000049 ... Q931G5 36768442
    11 8byv:k (2.89) BS01 rna ? GO:0003735 ... Q2FW31 36768442
    12 8byv:l (2.89) BS01 rna ? GO:0000049 ... P0A0H0 36768442
    13 8byv:m (2.89) BS01 rna ? GO:0000049 ... Q2FW30 36768442
    14 8byv:n (2.89) BS01 rna ? GO:0003735 ... Q2FW19 36768442
    15 8byv:o (2.89) BS01 rna ? GO:0003735 ... Q2G2Q1 36768442
    16 8byv:p (2.89) BS01 rna ? GO:0003735 ... Q2FZ45 36768442
    17 8byv:q (2.89) BS01 rna ? GO:0003735 ... Q2FW15 36768442
    18 8byv:r (2.89) BS01 rna ? GO:0003735 ... Q2G111 36768442
    19 8byv:s (2.89) BS01 rna ? GO:0000028 ... Q2FW10 36768442
    20 8byv:t (2.89) BS01 rna ? GO:0003723 ... Q2FXY6 36768442
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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