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BioLiP
Download all results in tab-seperated text for 138 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8btk:AA (3.5) BS01 rna ? GO:0000028 ... G1TZ76 37170030
    2 8btk:AB (3.5) BS01 rna ? GO:0000028 ... G1TIB4 37170030
    3 8btk:AC (3.5) BS01 rna ? GO:0003723 ... G1SK22 37170030
    4 8btk:AC (3.5) BS02 ZN ? GO:0003723 ... G1SK22 37170030
    5 8btk:AD (3.5) BS01 rna ? GO:0003735 ... G1T8A2 37170030
    6 8btk:AE (3.5) BS01 rna ? GO:0002181 ... A0A2K5LQY6 37170030
    7 8btk:AE (3.5) BS02 ZN ? GO:0002181 ... A0A2K5LQY6 37170030
    8 8btk:AF (3.5) BS01 rna ? GO:0001891 ... G1SJB4 37170030
    9 8btk:AG (3.5) BS01 rna ? GO:0003735 ... G1U7M4 37170030
    10 8btk:AG (3.5) BS02 ZN ? GO:0003735 ... G1U7M4 37170030
    11 8btk:AZ (3.5) BS01 rna ? GO:0000028 ... G1TLT8 37170030
    12 8btk:Aa (3.5) BS01 rna ? GO:0003735 ... G1SS70 37170030
    13 8btk:Ab (3.5) BS01 rna ? GO:0003723 ... A0A5F9D8I1 37170030
    14 8btk:Ac (3.5) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 37170030
    15 8btk:Ad (3.5) BS01 rna ? GO:0003723 ... G1TK17 37170030
    16 8btk:Ae (3.5) BS01 rna ? GO:0000028 ... G1TFM5 37170030
    17 8btk:Ae (3.5) BS02 MG ? GO:0000028 ... G1TFM5 37170030
    18 8btk:Af (3.5) BS01 rna ? GO:0000082 ... G1TM55 37170030
    19 8btk:Ag (3.5) BS01 rna ? GO:0003735 ... G1SVB0 37170030
    20 8btk:Ah (3.5) BS01 rna ? GO:0000462 ... G1TJW1 37170030
    21 8btk:Ah (3.5) BS02 rna ? GO:0000462 ... G1TJW1 37170030
    22 8btk:Ai (3.5) BS01 rna ? GO:0003723 ... B7NZS8 37170030
    23 8btk:Aj (3.5) BS01 rna ? GO:0003723 ... G1TPV3 37170030
    24 8btk:Ak (3.5) BS01 rna ? GO:0003735 ... G1TRM4 37170030
    25 8btk:Ak (3.5) BS02 MG ? GO:0003735 ... G1TRM4 37170030
    26 8btk:Al (3.5) BS01 rna ? GO:0003735 ... G1SFR8 37170030
    27 8btk:Am (3.5) BS01 rna ? GO:0003735 ... G1SP51 37170030
    28 8btk:Am (3.5) BS02 rna ? GO:0003735 ... G1SP51 37170030
    29 8btk:An (3.5) BS01 rna ? GO:0000028 ... G1T1F0 37170030
    30 8btk:An (3.5) BS02 MG ? GO:0000028 ... G1T1F0 37170030
    31 8btk:Ao (3.5) BS01 rna ? GO:0000028 ... G1U0Q2 37170030
    32 8btk:Ao (3.5) BS02 rna ? GO:0000028 ... G1U0Q2 37170030
    33 8btk:Ap (3.5) BS01 rna ? GO:0000462 ... G1SGX4 37170030
    34 8btk:Aq (3.5) BS01 rna ? GO:0003735 ... G1TU13 37170030
    35 8btk:Ar (3.5) BS01 rna ? GO:0003676 ... G1TPG3 37170030
    36 8btk:As (3.5) BS01 rna ? GO:0000028 ... G1TN62 37170030
    37 8btk:At (3.5) BS01 rna ? GO:0003723 ... G1SIZ2 37170030
    38 8btk:Av (3.5) BS01 rna ? GO:0003735 ... G1TG89 37170030
    39 8btk:Aw (3.5) BS01 rna ? GO:0003735 ... G1SZ47 37170030
    40 8btk:Ax (3.5) BS01 rna ? GO:0003735 ... G1T3D8 37170030
    41 8btk:Ay (3.5) BS01 rna ? GO:0003735 ... G1TDB3 37170030
    42 8btk:Ay (3.5) BS02 rna ? GO:0003735 ... G1TDB3 37170030
    43 8btk:BA (3.5) BS01 rna ? GO:0003723 ... A0A5F9C4D3
    A0A5F9D5B2    		 37170030
    44 8btk:BA (3.5) BS02 rna ? GO:0003723 ... A0A5F9C4D3
    A0A5F9D5B2    		 37170030
    45 8btk:BA (3.5) BS03 MG ? GO:0003723 ... A0A5F9C4D3
    A0A5F9D5B2    		 37170030
    46 8btk:BA (3.5) BS04 MG ? GO:0003723 ... A0A5F9C4D3
    A0A5F9D5B2    		 37170030
    47 8btk:BA (3.5) BS05 MG ? GO:0003723 ... A0A5F9C4D3
    A0A5F9D5B2    		 37170030
    48 8btk:BA (3.5) BS06 MG ? GO:0003723 ... A0A5F9C4D3
    A0A5F9D5B2    		 37170030
    49 8btk:BB (3.5) BS01 rna ? GO:0003723 ... G1TL06 37170030
    50 8btk:BB (3.5) BS02 MG ? GO:0003723 ... G1TL06 37170030
    51 8btk:BB (3.5) BS03 MG ? GO:0003723 ... G1TL06 37170030
    52 8btk:BB (3.5) BS04 MG ? GO:0003723 ... G1TL06 37170030
    53 8btk:BC (3.5) BS01 rna ? GO:0003723 ... G1SVW5 37170030
    54 8btk:BC (3.5) BS02 rna ? GO:0003723 ... G1SVW5 37170030
    55 8btk:BC (3.5) BS03 MG ? GO:0003723 ... G1SVW5 37170030
    56 8btk:BD (3.5) BS01 rna ? GO:0000027 ... P19949 37170030
    57 8btk:BD (3.5) BS02 rna ? GO:0000027 ... P19949 37170030
    58 8btk:BD (3.5) BS03 GTP ? GO:0000027 ... P19949 37170030
    59 8btk:BE (3.5) BS01 rna ? GO:0000027 ... G1SKF7 37170030
    60 8btk:BF (3.5) BS01 rna ? GO:0000463 ... G1SV32 37170030
    61 8btk:BF (3.5) BS02 rna ? GO:0000463 ... G1SV32 37170030
    62 8btk:BG (3.5) BS01 rna ? GO:0042254 ... G1STW0 37170030
    63 8btk:BG (3.5) BS02 rna ? GO:0042254 ... G1STW0 37170030
    64 8btk:BH (3.5) BS01 rna ? GO:0002181 ... G1SWI6 37170030
    65 8btk:BH (3.5) BS02 MG ? GO:0002181 ... G1SWI6 37170030
    66 8btk:BI (3.5) BS01 rna ? GO:0000027 ... B7NZQ2 37170030
    67 8btk:BI (3.5) BS02 rna ? GO:0000027 ... B7NZQ2 37170030
    68 8btk:BI (3.5) BS03 rna ? GO:0000027 ... B7NZQ2 37170030
    69 8btk:BI (3.5) BS04 MG ? GO:0000027 ... B7NZQ2 37170030
    70 8btk:BJ (3.5) BS01 rna ? GO:0003723 ... G1TUB8 37170030
    71 8btk:BJ (3.5) BS02 rna ? GO:0003723 ... G1TUB8 37170030
    72 8btk:BJ (3.5) BS03 rna ? GO:0003723 ... G1TUB8 37170030
    73 8btk:BL (3.5) BS01 rna ? GO:0003723 ... G1TKB3 37170030
    74 8btk:BL (3.5) BS02 rna ? GO:0003723 ... G1TKB3 37170030
    75 8btk:BL (3.5) BS03 MG ? GO:0003723 ... G1TKB3 37170030
    76 8btk:BM (3.5) BS01 rna ? GO:0003723 ... G1SZ12 37170030
    77 8btk:BN (3.5) BS01 rna ? GO:0002181 ... G1T0C1 37170030
    78 8btk:BN (3.5) BS02 rna ? GO:0002181 ... G1T0C1 37170030
    79 8btk:BN (3.5) BS03 MG ? GO:0002181 ... G1T0C1 37170030
    80 8btk:BN (3.5) BS04 MG ? GO:0002181 ... G1T0C1 37170030
    81 8btk:BO (3.5) BS01 rna ? GO:0003729 ... A0A0N8ETI8 37170030
    82 8btk:BP (3.5) BS01 rna ? GO:0002181 ... G1SCJ6 37170030
    83 8btk:BP (3.5) BS02 rna ? GO:0002181 ... G1SCJ6 37170030
    84 8btk:BQ (3.5) BS01 rna ? GO:0002181 ... F6QKI9 37170030
    85 8btk:BQ (3.5) BS02 MG ? GO:0002181 ... F6QKI9 37170030
    86 8btk:BQ (3.5) BS03 MG ? GO:0002181 ... F6QKI9 37170030
    87 8btk:BR (3.5) BS01 rna ? GO:0003723 ... Q3T0W9 37170030
    88 8btk:BR (3.5) BS02 rna ? GO:0003723 ... Q3T0W9 37170030
    89 8btk:BS (3.5) BS01 rna ? GO:0003735 ... G1TTY7 37170030
    90 8btk:BS (3.5) BS02 rna ? GO:0003735 ... G1TTY7 37170030
    91 8btk:BT (3.5) BS01 rna ? GO:0003735 ... G1SHQ2 37170030
    92 8btk:BT (3.5) BS02 rna ? GO:0003735 ... G1SHQ2 37170030
    93 8btk:BT (3.5) BS03 MG ? GO:0003735 ... G1SHQ2 37170030
    94 8btk:BU (3.5) BS01 rna ? GO:0002181 ... G1TSG1 37170030
    95 8btk:BV (3.5) BS01 rna ? GO:0000122 ... G1T6D1 37170030
    96 8btk:BW (3.5) BS01 rna ? GO:0000027 ... G1SE28 37170030
    97 8btk:BW (3.5) BS02 rna ? GO:0000027 ... G1SE28 37170030
    98 8btk:BX (3.5) BS01 rna ? GO:0000027 ... G1SE76 37170030
    99 8btk:BX (3.5) BS02 rna ? GO:0000027 ... G1SE76 37170030
    100 8btk:BY (3.5) BS01 rna ? GO:0002181 ... G1SQH0 37170030
    101 8btk:BY (3.5) BS02 rna ? GO:0002181 ... G1SQH0 37170030
    102 8btk:BZ (3.5) BS01 rna ? GO:0003735 ... G1TXF6 37170030
    103 8btk:Ba (3.5) BS01 rna ? GO:0003735 ... G1SNY0 37170030
    104 8btk:Bb (3.5) BS01 rna ? GO:0002181 ... G1SGR6 37170030
    105 8btk:Bb (3.5) BS02 MG ? GO:0002181 ... G1SGR6 37170030
    106 8btk:Bc (3.5) BS01 rna ? GO:0002181 ... G1TDL2 37170030
    107 8btk:Bc (3.5) BS02 rna ? GO:0002181 ... G1TDL2 37170030
    108 8btk:Bd (3.5) BS01 rna ? GO:0002181 ... G1SHG0 37170030
    109 8btk:Be (3.5) BS01 rna ? GO:0003735 ... G1TUN8 37170030
    110 8btk:Be (3.5) BS02 MG ? GO:0003735 ... G1TUN8 37170030
    111 8btk:Bf (3.5) BS01 rna ? GO:0000049 ... G1SF08 37170030
    112 8btk:Bf (3.5) BS02 MG ? GO:0000049 ... G1SF08 37170030
    113 8btk:Bg (3.5) BS01 rna ? GO:0003735 ... G1TXG5 37170030
    114 8btk:Bg (3.5) BS02 ZN ? GO:0003735 ... G1TXG5 37170030
    115 8btk:Bh (3.5) BS01 rna ? GO:0000463 ... G1SIT5 37170030
    116 8btk:Bh (3.5) BS02 rna ? GO:0000463 ... G1SIT5 37170030
    117 8btk:Bi (3.5) BS01 rna ? GO:0002181 ... G1TTQ5 37170030
    118 8btk:Bj (3.5) BS01 rna ? GO:0003723 ... U3KPD5 37170030
    119 8btk:Bj (3.5) BS02 rna ? GO:0003723 ... U3KPD5 37170030
    120 8btk:Bj (3.5) BS03 ZN ? GO:0003723 ... U3KPD5 37170030
    121 8btk:Bk (3.5) BS01 rna ? GO:0003735 ... G1U001 37170030
    122 8btk:Bl (3.5) BS01 rna ? GO:0003735 ... G1TTN1 37170030
    123 8btk:Bl (3.5) BS02 rna ? GO:0003735 ... G1TTN1 37170030
    124 8btk:Bm (3.5) BS01 rna ? GO:0003723 ... P62975 37170030
    125 8btk:Bm (3.5) BS02 ZN ? GO:0003723 ... P62975 37170030
    126 8btk:Bo (3.5) BS01 rna ? GO:0003735 ... G1T040 37170030
    127 8btk:Bo (3.5) BS02 rna ? GO:0003735 ... G1T040 37170030
    128 8btk:Bo (3.5) BS03 ZN ? GO:0003735 ... G1T040 37170030
    129 8btk:Bp (3.5) BS01 rna ? GO:0003735 ... G1SY53 37170030
    130 8btk:Bp (3.5) BS02 ZN ? GO:0003735 ... G1SY53 37170030
    131 8btk:Br (3.5) BS01 rna ? GO:0003735 ... G1U7L1 37170030
    132 8btk:Bs (3.5) BS01 rna ? GO:0000027 ... G1SPK4 37170030
    133 8btk:Bt (3.5) BS01 rna ? GO:0003723 ... G1SMR7 37170030
    134 8btk:Bv (3.5) BS01 rna ? GO:0000470 ... G1SKZ8 37170030
    135 8btk:SX (3.5) BS01 rna ? GO:0005048 ... P38377 37170030
    136 8btk:SX (3.5) BS02 peptide ? GO:0005048 ... P38377 37170030
    137 8btk:SY (3.5) BS01 peptide ? GO:0005543 ... P60058 37170030
    138 8btk:TC (3.5) BS01 rna ? GO:0005783 ... A0A8C0T6I4 37170030
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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