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BioLiP
Download all results in tab-seperated text for 94 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8bsj:LA (6.49) BS01 rna ? GO:0002181 ... E2RTN4 36912103
    2 8bsj:LB (6.49) BS01 rna ? GO:0003723 ... A8BRZ3 36912103
    3 8bsj:LC (6.49) BS01 rna ? GO:0003723 ... A8B7H8 36912103
    4 8bsj:LC (6.49) BS02 rna ? GO:0003723 ... A8B7H8 36912103
    5 8bsj:LF (6.49) BS01 rna ? GO:0000027 ... E2RU47 36912103
    6 8bsj:LF (6.49) BS02 rna ? GO:0000027 ... E2RU47 36912103
    7 8bsj:LG (6.49) BS01 rna ? GO:0003735 ... A0A644EZB9 36912103
    8 8bsj:LG (6.49) BS02 rna ? GO:0003735 ... A0A644EZB9 36912103
    9 8bsj:LH (6.49) BS01 rna ? GO:0000463 ... A8BRY6 36912103
    10 8bsj:LH (6.49) BS02 rna ? GO:0000463 ... A8BRY6 36912103
    11 8bsj:LI (6.49) BS01 rna ? GO:0000470 ... A8BLL7 36912103
    12 8bsj:LI (6.49) BS02 rna ? GO:0000470 ... A8BLL7 36912103
    13 8bsj:LJ (6.49) BS01 rna ? GO:0002181 ... A8BNT5 36912103
    14 8bsj:LK (6.49) BS01 rna ? GO:0000027 ... A8BM86 36912103
    15 8bsj:LK (6.49) BS02 rna ? GO:0000027 ... A8BM86 36912103
    16 8bsj:LK (6.49) BS03 rna ? GO:0000027 ... A8BM86 36912103
    17 8bsj:LL (6.49) BS01 rna ? GO:0003723 ... A8BI95 36912103
    18 8bsj:LL (6.49) BS02 rna ? GO:0003723 ... A8BI95 36912103
    19 8bsj:LL (6.49) BS03 rna ? GO:0003723 ... A8BI95 36912103
    20 8bsj:LM (6.49) BS01 rna ? GO:0003735 ... A8B6M8 36912103
    21 8bsj:LM (6.49) BS02 rna ? GO:0003735 ... A8B6M8 36912103
    22 8bsj:LN (6.49) BS01 rna ? GO:0003723 ... A8B4F8 36912103
    23 8bsj:LO (6.49) BS01 rna ? GO:0002181 ... A8B8Z6 36912103
    24 8bsj:LO (6.49) BS02 rna ? GO:0002181 ... A8B8Z6 36912103
    25 8bsj:LP (6.49) BS01 rna ? GO:0003729 ... A8BU75 36912103
    26 8bsj:LQ (6.49) BS01 rna ? GO:0002181 ... A8BE76 36912103
    27 8bsj:LQ (6.49) BS02 rna ? GO:0002181 ... A8BE76 36912103
    28 8bsj:LR (6.49) BS01 rna ? GO:0003723 ... A8B4T7 36912103
    29 8bsj:LS (6.49) BS01 rna ? GO:0003723 ... A8BH61 36912103
    30 8bsj:LS (6.49) BS02 rna ? GO:0003723 ... A8BH61 36912103
    31 8bsj:LT (6.49) BS01 rna ? GO:0003735 ... A8BT04 36912103
    32 8bsj:LT (6.49) BS02 rna ? GO:0003735 ... A8BT04 36912103
    33 8bsj:LU (6.49) BS01 rna ? GO:0003735 ... A8B2Q4 36912103
    34 8bsj:LU (6.49) BS02 rna ? GO:0003735 ... A8B2Q4 36912103
    35 8bsj:LV (6.49) BS01 rna ? GO:0002181 ... A0A644FC41 36912103
    36 8bsj:LW (6.49) BS01 rna ? GO:0003735 ... A8BS37 36912103
    37 8bsj:LW (6.49) BS02 rna ? GO:0003735 ... A8BS37 36912103
    38 8bsj:LX (6.49) BS01 rna ? GO:0005730 ... A8B7P2 36912103
    39 8bsj:LY (6.49) BS01 rna ? GO:0000027 ... A8BMP6 36912103
    40 8bsj:LY (6.49) BS02 rna ? GO:0000027 ... A8BMP6 36912103
    41 8bsj:LZ (6.49) BS01 rna ? GO:0002181 ... A8BFT3 36912103
    42 8bsj:LZ (6.49) BS02 rna ? GO:0002181 ... A8BFT3 36912103
    43 8bsj:La (6.49) BS01 rna ? GO:0003735 ... A8B1T3 36912103
    44 8bsj:Lb (6.49) BS01 rna ? GO:0003735 ... A8BZ78 36912103
    45 8bsj:Lc (6.49) BS01 rna ? GO:0002181 ... A8BYY2 36912103
    46 8bsj:Ld (6.49) BS01 rna ? GO:0003723 ... A8B5N7 36912103
    47 8bsj:Le (6.49) BS01 rna ? GO:0002181 ... A8BMP3 36912103
    48 8bsj:Lf (6.49) BS01 rna ? GO:0003735 ... A8BMD9 36912103
    49 8bsj:Lg (6.49) BS01 rna ? GO:0002181 ... A8BKK5 36912103
    50 8bsj:Lh (6.49) BS01 rna ? GO:0003735 ... A8BMF7 36912103
    51 8bsj:Li (6.49) BS01 rna ? GO:0000463 ... A0A644FBK5 36912103
    52 8bsj:Li (6.49) BS02 rna ? GO:0000463 ... A0A644FBK5 36912103
    53 8bsj:Lj (6.49) BS01 rna ? GO:0002181 ... A8BYA6 36912103
    54 8bsj:Lk (6.49) BS01 rna ? GO:0003723 ... A8BLV7 36912103
    55 8bsj:Lk (6.49) BS02 rna ? GO:0003723 ... A8BLV7 36912103
    56 8bsj:Ll (6.49) BS01 rna ? GO:0003735 ... A8B481 36912103
    57 8bsj:Ln (6.49) BS01 rna ? GO:0003723 ... A0A644FB74 36912103
    58 8bsj:Lp (6.49) BS01 rna ? GO:0003735 ... A8BQU8 36912103
    59 8bsj:Lp (6.49) BS02 rna ? GO:0003735 ... A8BQU8 36912103
    60 8bsj:Lq (6.49) BS01 rna ? GO:0003735 ... A8BN26 36912103
    61 8bsj:Ls (6.49) BS01 rna ? GO:0003735 ... A8BXE1 36912103
    62 8bsj:SA (6.49) BS01 rna ? GO:0000028 ... A0A644FB17 36912103
    63 8bsj:SB (6.49) BS01 rna ? GO:0003723 ... A8BMZ1 36912103
    64 8bsj:SC (6.49) BS01 rna ? GO:0003723 ... A8B8Z2 36912103
    65 8bsj:SD (6.49) BS01 rna ? GO:0003735 ... A0A644F9A2 36912103
    66 8bsj:SE (6.49) BS01 rna ? GO:0003723 ... A8BFE3 36912103
    67 8bsj:SF (6.49) BS01 rna ? GO:0000028 ... A8BZD3 36912103
    68 8bsj:SG (6.49) BS01 rna ? GO:0003735 ... A8B6L8 36912103
    69 8bsj:SH (6.49) BS01 rna ? GO:0003735 ... A8BT38 36912103
    70 8bsj:SI (6.49) BS01 rna ? GO:0000462 ... A8B252 36912103
    71 8bsj:SI (6.49) BS02 rna ? GO:0000462 ... A8B252 36912103
    72 8bsj:SJ (6.49) BS01 rna ? GO:0003735 ... E2RU77 36912103
    73 8bsj:SK (6.49) BS01 rna ? GO:0003723 ... A8BKS8 36912103
    74 8bsj:SL (6.49) BS01 rna ? GO:0003723 ... A8BRX3 36912103
    75 8bsj:SM (6.49) BS01 rna ? GO:0003735 ... A8BVU0 36912103
    76 8bsj:SO (6.49) BS01 rna ? GO:0003735 ... V6T9I6 36912103
    77 8bsj:SO (6.49) BS02 rna ? GO:0003735 ... V6T9I6 36912103
    78 8bsj:SP (6.49) BS01 rna ? GO:0003735 ... A8BE02 36912103
    79 8bsj:SQ (6.49) BS01 rna ? GO:0000028 ... Q76KS3 36912103
    80 8bsj:SR (6.49) BS01 rna ? GO:0000028 ... A8BBP3 36912103
    81 8bsj:ST (6.49) BS01 rna ? GO:0000462 ... A8BKC6 36912103
    82 8bsj:SU (6.49) BS01 rna ? GO:0003735 ... A8BRG5 36912103
    83 8bsj:SV (6.49) BS01 rna ? GO:0003676 ... A8BZ58 36912103
    84 8bsj:SV (6.49) BS02 rna ? GO:0003676 ... A8BZ58 36912103
    85 8bsj:SW (6.49) BS01 rna ? GO:0000028 ... A0A644F964 36912103
    86 8bsj:SX (6.49) BS01 rna ? GO:0003735 ... A8B4G0 36912103
    87 8bsj:Sb (6.49) BS01 rna ? GO:0003735 ... A8B593 36912103
    88 8bsj:Sc (6.49) BS01 rna ? GO:0003735 ... A8B8H7 36912103
    89 8bsj:Sd (6.49) BS01 rna ? GO:0003729 ... A8BQZ7 36912103
    90 8bsj:Se (6.49) BS01 rna ? GO:0000028 ... A0A644F5K9 36912103
    91 8bsj:Sg (6.49) BS01 rna ? GO:0000028 ... A8B4F3 36912103
    92 8bsj:Sh (6.49) BS01 rna ? GO:0003735 ... A8B7H6 36912103
    93 8bsj:Sj (6.49) BS01 rna ? GO:0003735 ... A0A644F843 36912103
    94 8bsj:Sj (6.49) BS02 rna ? GO:0003735 ... A0A644F843 36912103
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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