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BioLiP
Download all results in tab-seperated text for 45 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8bq6:A (2.8) BS01 UQ9 7.1.1.2 GO:0005739 ... P92533 36585502
    2 8bq6:AB (2.8) BS01 peptide 3.4.24.64 GO:0000325 ... Q42290 36585502
    3 8bq6:AB (2.8) BS02 ZN 3.4.24.64 GO:0000325 ... Q42290 36585502
    4 8bq6:AC (2.8) BS01 HEM ? GO:0005739 ... P42792 36585502
    5 8bq6:AC (2.8) BS02 HEM ? GO:0005739 ... P42792 36585502
    6 8bq6:AC (2.8) BS03 UQ5 ? GO:0005739 ... P42792 36585502
    7 8bq6:AC (2.8) BS04 UQ5 ? GO:0005739 ... P42792 36585502
    8 8bq6:AD (2.8) BS01 peptide 7.1.1.8 GO:0005739 ... Q94JS0 36585502
    9 8bq6:AD (2.8) BS02 FES 7.1.1.8 GO:0005739 ... Q94JS0 36585502
    10 8bq6:AD (2.8) BS03 UQ7 7.1.1.8 GO:0005739 ... Q94JS0 36585502
    11 8bq6:AE (2.8) BS01 HEM ? GO:0005515 ... Q9FKS5 36585502
    12 8bq6:AI (2.8) BS01 peptide ? GO:0005739 ... Q9LXJ2 36585502
    13 8bq6:B (2.8) BS01 SF4 7.1.1.2 GO:0005739 ... Q42577 36585502
    14 8bq6:BB (2.8) BS01 ZN 3.4.24.64 GO:0000325 ... Q42290 36585502
    15 8bq6:BC (2.8) BS01 HEM ? GO:0005739 ... P42792 36585502
    16 8bq6:BC (2.8) BS02 HEM ? GO:0005739 ... P42792 36585502
    17 8bq6:BC (2.8) BS03 UQ5 ? GO:0005739 ... P42792 36585502
    18 8bq6:BC (2.8) BS04 UQ7 ? GO:0005739 ... P42792 36585502
    19 8bq6:BD (2.8) BS01 peptide 7.1.1.8 GO:0005739 ... Q94JS0 36585502
    20 8bq6:BD (2.8) BS02 FES 7.1.1.8 GO:0005739 ... Q94JS0 36585502
    21 8bq6:BE (2.8) BS01 HEM ? GO:0005515 ... Q9FKS5 36585502
    22 8bq6:BI (2.8) BS01 peptide ? GO:0005739 ... Q9LXJ2 36585502
    23 8bq6:D (2.8) BS01 SF4 7.1.1.2 GO:0005739 ... P93306 36585502
    24 8bq6:E (2.8) BS01 FES 7.1.1.2 GO:0005739 ... O22769 36585502
    25 8bq6:F (2.8) BS01 FMN 7.1.1.2 GO:0005739 ... Q9FNN5 36585502
    26 8bq6:F (2.8) BS02 SF4 7.1.1.2 GO:0005739 ... Q9FNN5 36585502
    27 8bq6:G (2.8) BS01 FES 7.1.1.2 GO:0005739 ... Q9FGI6 36585502
    28 8bq6:G (2.8) BS02 SF4 7.1.1.2 GO:0005739 ... Q9FGI6 36585502
    29 8bq6:G (2.8) BS03 SF4 7.1.1.2 GO:0005739 ... Q9FGI6 36585502
    30 8bq6:H (2.8) BS01 UQ9 7.1.1.2 GO:0005739 ... B5TM92 36585502
    31 8bq6:I (2.8) BS01 SF4 7.1.1.2 GO:0005739 ... Q42599 36585502
    32 8bq6:I (2.8) BS02 SF4 7.1.1.2 GO:0005739 ... Q42599 36585502
    33 8bq6:O (2.8) BS01 FE ? GO:0051536 ... A0A384LA38 36585502
    34 8bq6:P (2.8) BS01 NDP ? GO:0005739 ... Q9SK66 36585502
    35 8bq6:R (2.8) BS01 ZN ? GO:0005739 ... Q9M9M6 36585502
    36 8bq6:T (2.8) BS01 8Q1 ? GO:0000036 ... P53665 36585502
    37 8bq6:U (2.8) BS01 8Q1 ? GO:0000036 ... O80800 36585502
    38 8bq6:W (2.8) BS01 8Q1 ? GO:0005739 ... Q9LHI0 36585502
    39 8bq6:f (2.8) BS01 peptide ? GO:0005739 ... Q84W12 36585502
    40 8bq6:n (2.8) BS01 8Q1 ? GO:0000325 ... Q945M1 36585502
    41 8bq6:x (2.8) BS01 COO ? GO:0000325 ... Q9SMN1 36585502
    42 8bq6:y (2.8) BS01 peptide 4.2.1.- GO:0004089 ... Q9C6B3 36585502
    43 8bq6:y (2.8) BS02 ZN 4.2.1.- GO:0004089 ... Q9C6B3 36585502
    44 8bq6:y (2.8) BS03 COO 4.2.1.- GO:0004089 ... Q9C6B3 36585502
    45 8bq6:z (2.8) BS01 peptide 4.2.1.- GO:0004089 ... Q9FWR5 36585502
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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