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BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8bjq:B (3.8) BS01 rna ? GO:0000001 ... Q12387 37079644
    2 8bjq:D (3.8) BS01 rna ? GO:0000001 ... Q12387 37079644
    3 8bjq:LA (3.8) BS01 rna ? GO:0002181 ... P0CX45 37079644
    4 8bjq:LA (3.8) BS02 MG ? GO:0002181 ... P0CX45 37079644
    5 8bjq:LB (3.8) BS01 rna ? GO:0000027 ... P14126 37079644
    6 8bjq:LC (3.8) BS01 rna ? GO:0002181 ... P10664 37079644
    7 8bjq:LC (3.8) BS02 rna ? GO:0002181 ... P10664 37079644
    8 8bjq:LD (3.8) BS01 rna ? GO:0000027 ... P26321 37079644
    9 8bjq:LD (3.8) BS02 rna ? GO:0000027 ... P26321 37079644
    10 8bjq:LE (3.8) BS01 rna ? GO:0000027 ... P05739 37079644
    11 8bjq:LF (3.8) BS01 rna ? GO:0000463 ... P05737 37079644
    12 8bjq:LF (3.8) BS02 rna ? GO:0000463 ... P05737 37079644
    13 8bjq:LG (3.8) BS01 rna ? GO:0000470 ... P17076 37079644
    14 8bjq:LG (3.8) BS02 rna ? GO:0000470 ... P17076 37079644
    15 8bjq:LH (3.8) BS01 rna ? GO:0002181 ... P05738 37079644
    16 8bjq:LI (3.8) BS01 rna ? GO:0000027 ... P41805 37079644
    17 8bjq:LI (3.8) BS02 rna ? GO:0000027 ... P41805 37079644
    18 8bjq:LJ (3.8) BS01 rna ? GO:0000027 ... Q3E757 37079644
    19 8bjq:LJ (3.8) BS02 rna ? GO:0000027 ... Q3E757 37079644
    20 8bjq:LL (3.8) BS01 rna ? GO:0002181 ... Q12690 37079644
    21 8bjq:LL (3.8) BS02 rna ? GO:0002181 ... Q12690 37079644
    22 8bjq:LM (3.8) BS01 rna ? GO:0000027 ... P36105 37079644
    23 8bjq:LN (3.8) BS01 rna ? GO:0002181 ... P05748 37079644
    24 8bjq:LN (3.8) BS02 rna ? GO:0002181 ... P05748 37079644
    25 8bjq:LO (3.8) BS01 rna ? GO:0000470 ... P26784 37079644
    26 8bjq:LP (3.8) BS01 rna ? GO:0000448 ... P05740 37079644
    27 8bjq:LP (3.8) BS02 rna ? GO:0000448 ... P05740 37079644
    28 8bjq:LQ (3.8) BS01 rna ? GO:0002181 ... P0CX49 37079644
    29 8bjq:LR (3.8) BS01 rna ? GO:0002181 ... P0CX82 37079644
    30 8bjq:LS (3.8) BS01 rna ? GO:0002181 ... P0CX23 37079644
    31 8bjq:LS (3.8) BS02 rna ? GO:0002181 ... P0CX23 37079644
    32 8bjq:LT (3.8) BS01 rna ? GO:0002181 ... Q02753 37079644
    33 8bjq:LT (3.8) BS02 rna ? GO:0002181 ... Q02753 37079644
    34 8bjq:LU (3.8) BS01 rna ? GO:0003735 ... P05749 37079644
    35 8bjq:LV (3.8) BS01 rna ? GO:0002181 ... P0CX41 37079644
    36 8bjq:LW (3.8) BS01 rna ? N/A P04449 37079644
    37 8bjq:LX (3.8) BS01 rna ? GO:0003735 ... P04456 37079644
    38 8bjq:LX (3.8) BS02 rna ? GO:0003735 ... P04456 37079644
    39 8bjq:LY (3.8) BS01 rna ? GO:0002181 ... P05743 37079644
    40 8bjq:LY (3.8) BS02 rna ? GO:0002181 ... P05743 37079644
    41 8bjq:LZ (3.8) BS01 rna ? GO:0002181 ... P0C2H6 37079644
    42 8bjq:La (3.8) BS01 rna ? GO:0002181 ... P02406 37079644
    43 8bjq:Lb (3.8) BS01 rna ? GO:0002181 ... P05747 37079644
    44 8bjq:Lc (3.8) BS01 rna ? GO:0002181 ... P14120 37079644
    45 8bjq:Ld (3.8) BS01 rna ? GO:0002181 ... P0C2H8 37079644
    46 8bjq:Le (3.8) BS01 rna ? GO:0002181 ... P38061 37079644
    47 8bjq:Le (3.8) BS02 MG ? GO:0002181 ... P38061 37079644
    48 8bjq:Lf (3.8) BS01 rna ? GO:0000027 ... P05744 37079644
    49 8bjq:Lg (3.8) BS01 rna ? GO:0002181 ... P87262 37079644
    50 8bjq:Lg (3.8) BS02 ZN ? GO:0002181 ... P87262 37079644
    51 8bjq:Lh (3.8) BS01 rna ? GO:0000463 ... P0CX84 37079644
    52 8bjq:Lh (3.8) BS02 rna ? GO:0000463 ... P0CX84 37079644
    53 8bjq:Li (3.8) BS01 rna ? GO:0002181 ... P05745 37079644
    54 8bjq:Lj (3.8) BS01 rna ? GO:0000448 ... P49166 37079644
    55 8bjq:Lj (3.8) BS02 rna ? GO:0000448 ... P49166 37079644
    56 8bjq:Lj (3.8) BS03 ZN ? GO:0000448 ... P49166 37079644
    57 8bjq:Lk (3.8) BS01 rna ? GO:0002181 ... P49167 37079644
    58 8bjq:Ll (3.8) BS01 rna ? GO:0002181 ... P04650 37079644
    59 8bjq:Ll (3.8) BS02 rna ? GO:0002181 ... P04650 37079644
    60 8bjq:Lm (3.8) BS01 rna ? GO:0003735 ... P0CH08 37079644
    61 8bjq:Lm (3.8) BS02 ZN ? GO:0003735 ... P0CH08 37079644
    62 8bjq:Lo (3.8) BS01 rna ? GO:0002181 ... P0CX27 37079644
    63 8bjq:Lo (3.8) BS02 ZN ? GO:0002181 ... P0CX27 37079644
    64 8bjq:Lp (3.8) BS01 rna ? GO:0002181 ... P0CX25 37079644
    65 8bjq:Lp (3.8) BS02 ZN ? GO:0002181 ... P0CX25 37079644
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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