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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8bh6:b (3.7) BS01 rna ? GO:0003735 ... Q2FZ25 N/A
    2 8bh6:c (3.7) BS01 rna ? GO:0003676 ... Q2FW12 N/A
    3 8bh6:d (3.7) BS01 rna ? GO:0003723 ... Q2FXK6 N/A
    4 8bh6:e (3.7) BS01 rna ? GO:0003723 ... Q2FW23 N/A
    5 8bh6:f (3.7) BS01 rna ? GO:0003735 ... Q2G113 N/A
    6 8bh6:g (3.7) BS01 rna ? GO:0000028 ... P48940 N/A
    7 8bh6:h (3.7) BS01 rna ? GO:0003735 ... Q2FW20 N/A
    8 8bh6:i (3.7) BS01 rna ? GO:0003723 ... Q2FW39 N/A
    9 8bh6:j (3.7) BS01 rna ? GO:0000049 ... Q931G5 N/A
    10 8bh6:k (3.7) BS01 rna ? GO:0003735 ... Q2FW31 N/A
    11 8bh6:l (3.7) BS01 rna ? GO:0000049 ... P0A0H0 N/A
    12 8bh6:m (3.7) BS01 rna ? GO:0000049 ... Q2FW30 N/A
    13 8bh6:n (3.7) BS01 rna ? GO:0003735 ... Q2FW19 N/A
    14 8bh6:o (3.7) BS01 rna ? GO:0003735 ... Q2G2Q1 N/A
    15 8bh6:p (3.7) BS01 rna ? GO:0003735 ... Q2FZ45 N/A
    16 8bh6:q (3.7) BS01 rna ? GO:0003735 ... Q2FW15 N/A
    17 8bh6:r (3.7) BS01 rna ? GO:0003735 ... Q2G111 N/A
    18 8bh6:s (3.7) BS01 rna ? GO:0000028 ... Q2FW10 N/A
    19 8bh6:t (3.7) BS01 rna ? GO:0003723 ... Q2FXY6 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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