Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8azw:D (2.14) BS01 rna ? GO:0003723 ... A0A1S4CSN1 37156858
    2 8azw:D (2.14) BS02 rna ? GO:0003723 ... A0A1S4CSN1 37156858
    3 8azw:E (2.14) BS01 rna ? GO:0003723 ... A0A1S4A807 37156858
    4 8azw:F (2.14) BS01 rna ? GO:0002181 ... A0A1S4D5P7 37156858
    5 8azw:F (2.14) BS02 rna ? GO:0002181 ... A0A1S4D5P7 37156858
    6 8azw:G (2.14) BS01 rna ? GO:0003723 ... A0A1S4DF55 37156858
    7 8azw:H (2.14) BS01 rna ? GO:0003723 ... A0A1S3X0I4 37156858
    8 8azw:I (2.14) BS01 rna ? GO:0003735 ... A0A1S4CP52 37156858
    9 8azw:I (2.14) BS02 rna ? GO:0003735 ... A0A1S4CP52 37156858
    10 8azw:J (2.14) BS01 rna ? GO:0003735 ... A0A1S3XCW6 37156858
    11 8azw:J (2.14) BS02 rna ? GO:0003735 ... A0A1S3XCW6 37156858
    12 8azw:K (2.14) BS01 rna ? GO:0002181 ... A0A1S4BSU3 37156858
    13 8azw:L (2.14) BS01 rna ? GO:0002181 ... A0A1S4BHF2 37156858
    14 8azw:M (2.14) BS01 rna ? GO:0003735 ... A0A1S4AEL0 37156858
    15 8azw:N (2.14) BS01 rna ? GO:0003735 ... A0A1S4D1U6 37156858
    16 8azw:O (2.14) BS01 rna ? GO:0002181 ... A0A1S3YR12 37156858
    17 8azw:P (2.14) BS01 rna ? GO:0003723 ... A0A1S3WZ09 37156858
    18 8azw:Q (2.14) BS01 rna ? GO:0002181 ... A0A1S3Y3V5 37156858
    19 8azw:R (2.14) BS01 rna ? GO:0003735 ... A0A1S3Z2X4 37156858
    20 8azw:S (2.14) BS01 rna ? GO:0002181 ... A0A1S3XU79 37156858
    21 8azw:T (2.14) BS01 rna ? GO:0003735 ... P41098 37156858
    22 8azw:U (2.14) BS01 rna ? GO:0002181 ... A0A1S4D2I2 37156858
    23 8azw:V (2.14) BS01 rna ? GO:0003723 ... A0A1S4DN51 37156858
    24 8azw:V (2.14) BS02 rna ? GO:0003723 ... A0A1S4DN51 37156858
    25 8azw:V (2.14) BS03 ZN ? GO:0003723 ... A0A1S4DN51 37156858
    26 8azw:W (2.14) BS01 rna ? GO:0003735 ... A0A1S4C4G8 37156858
    27 8azw:X (2.14) BS01 rna ? GO:0003735 ... A0A1S3YR32 37156858
    28 8azw:X (2.14) BS02 rna ? GO:0003735 ... A0A1S3YR32 37156858
    29 8azw:Y (2.14) BS01 rna N/A GO:0003735 ... N/A 37156858
    30 8azw:Y (2.14) BS02 ZN N/A GO:0003735 ... N/A 37156858
    31 8azw:Z (2.14) BS01 rna ? GO:0003735 ... A0A1S4AVP7 37156858
    32 8azw:Z (2.14) BS02 ZN ? GO:0003735 ... A0A1S4AVP7 37156858
    33 8azw:a (2.14) BS01 rna ? GO:0003735 ... A0A1S3X5Y9 37156858
    34 8azw:a (2.14) BS02 ZN ? GO:0003735 ... A0A1S3X5Y9 37156858
    35 8azw:b (2.14) BS01 rna ? GO:0000027 ... A0A1S4B0G2 37156858
    36 8azw:c (2.14) BS01 rna ? GO:0000470 ... A0A1S4D668 37156858
    37 8azw:c (2.14) BS02 rna ? GO:0000470 ... A0A1S4D668 37156858
    38 8azw:d (2.14) BS01 rna ? GO:0003729 ... A0A1S4DN49 37156858
    39 8azw:e (2.14) BS01 rna ? GO:0003735 ... A0A1S3XSQ1 37156858
    40 8azw:f (2.14) BS01 rna ? GO:0003729 ... A0A1S4BFD5 37156858
    41 8azw:g (2.14) BS01 rna ? GO:0000027 ... A0A1S3Z2D7 37156858
    42 8azw:g (2.14) BS02 rna ? GO:0000027 ... A0A1S3Z2D7 37156858
    43 8azw:h (2.14) BS01 rna ? GO:0000027 ... A0A1S3XE16 37156858
    44 8azw:h (2.14) BS02 rna ? GO:0000027 ... A0A1S3XE16 37156858
    45 8azw:j (2.14) BS01 rna ? GO:0002181 ... A0A1S4CCH0 37156858
    46 8azw:j (2.14) BS02 rna ? GO:0002181 ... A0A1S4CCH0 37156858
    47 8azw:k (2.14) BS01 rna ? GO:0000027 ... Q07761 37156858
    48 8azw:k (2.14) BS02 rna ? GO:0000027 ... Q07761 37156858
    49 8azw:m (2.14) BS01 rna ? GO:0002181 ... A0A1S4DPM5 37156858
    50 8azw:m (2.14) BS02 rna ? GO:0002181 ... A0A1S4DPM5 37156858
    51 8azw:n (2.14) BS01 rna ? GO:0000463 ... A0A1S3WY31 37156858
    52 8azw:n (2.14) BS02 rna ? GO:0000463 ... A0A1S3WY31 37156858
    53 8azw:o (2.14) BS01 rna ? GO:0002181 ... A0A1S3XXQ5 37156858
    54 8azw:q (2.14) BS01 rna ? GO:0000463 ... A0A1S4A5Z2 37156858
    55 8azw:q (2.14) BS02 rna ? GO:0000463 ... A0A1S4A5Z2 37156858
    56 8azw:q (2.14) BS03 MG ? GO:0000463 ... A0A1S4A5Z2 37156858
    57 8azw:r (2.14) BS01 rna ? GO:0003723 ... A0A1S3ZLI9 37156858
    58 8azw:s (2.14) BS01 rna ? GO:0003723 ... A0A1S3X0M5 37156858
    59 8azw:s (2.14) BS02 rna ? GO:0003723 ... A0A1S3X0M5 37156858
    60 8azw:t (2.14) BS01 rna ? GO:0003723 ... A0A1S3XAW1 37156858
    61 8azw:t (2.14) BS02 rna ? GO:0003723 ... A0A1S3XAW1 37156858
    62 8azw:u (2.14) BS01 rna ? GO:0002181 ... A0A1S4C068 37156858
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218