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BioLiP
Download all results in tab-seperated text for 169 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8apo:AA (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    2 8apo:AB (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    3 8apo:AB (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    4 8apo:AB (3.2) BS03 rna N/A GO:0003735 ... N/A 36253367
    5 8apo:AC (3.2) BS01 rna N/A N/A N/A 36253367
    6 8apo:AC (3.2) BS02 rna N/A N/A N/A 36253367
    7 8apo:AC (3.2) BS03 rna N/A N/A N/A 36253367
    8 8apo:AC (3.2) BS04 rna N/A N/A N/A 36253367
    9 8apo:AD (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    10 8apo:AD (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    11 8apo:AD (3.2) BS03 ZN N/A GO:0003735 ... N/A 36253367
    12 8apo:AE (3.2) BS01 rna N/A N/A N/A 36253367
    13 8apo:AF (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    14 8apo:AF (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    15 8apo:AG (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    16 8apo:AI (3.2) BS01 rna N/A N/A N/A 36253367
    17 8apo:AI (3.2) BS02 rna N/A N/A N/A 36253367
    18 8apo:AI (3.2) BS03 rna N/A N/A N/A 36253367
    19 8apo:AJ (3.2) BS01 rna N/A N/A N/A 36253367
    20 8apo:AK (3.2) BS01 rna N/A N/A N/A 36253367
    21 8apo:AK (3.2) BS02 rna N/A N/A N/A 36253367
    22 8apo:AL (3.2) BS01 rna N/A N/A N/A 36253367
    23 8apo:AM (3.2) BS01 rna N/A N/A N/A 36253367
    24 8apo:AM (3.2) BS02 rna N/A N/A N/A 36253367
    25 8apo:AM (3.2) BS03 rna N/A N/A N/A 36253367
    26 8apo:AM (3.2) BS04 rna N/A N/A N/A 36253367
    27 8apo:AN (3.2) BS01 rna N/A N/A N/A 36253367
    28 8apo:AN (3.2) BS02 rna N/A N/A N/A 36253367
    29 8apo:AO (3.2) BS01 rna N/A N/A N/A 36253367
    30 8apo:Aa (3.2) BS01 rna N/A GO:0003723 ... N/A 36253367
    31 8apo:Aa (3.2) BS02 rna N/A GO:0003723 ... N/A 36253367
    32 8apo:Aa (3.2) BS03 rna N/A GO:0003723 ... N/A 36253367
    33 8apo:Ab (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    34 8apo:Ab (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    35 8apo:Ab (3.2) BS03 rna N/A GO:0003735 ... N/A 36253367
    36 8apo:Ac (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    37 8apo:Ac (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    38 8apo:Ac (3.2) BS03 rna N/A GO:0003735 ... N/A 36253367
    39 8apo:Ac (3.2) BS04 rna N/A GO:0003735 ... N/A 36253367
    40 8apo:Ac (3.2) BS05 rna N/A GO:0003735 ... N/A 36253367
    41 8apo:Ad (3.2) BS01 rna N/A N/A N/A 36253367
    42 8apo:Ae (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    43 8apo:Ah (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    44 8apo:Ah (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    45 8apo:Ah (3.2) BS03 rna N/A GO:0003735 ... N/A 36253367
    46 8apo:Ah (3.2) BS04 rna N/A GO:0003735 ... N/A 36253367
    47 8apo:Ai (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    48 8apo:Ai (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    49 8apo:Aj (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    50 8apo:Aj (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    51 8apo:Aj (3.2) BS03 rna N/A GO:0003735 ... N/A 36253367
    52 8apo:Aj (3.2) BS04 rna N/A GO:0003735 ... N/A 36253367
    53 8apo:Aj (3.2) BS05 rna N/A GO:0003735 ... N/A 36253367
    54 8apo:Ak (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    55 8apo:Ak (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    56 8apo:Ak (3.2) BS03 rna N/A GO:0003735 ... N/A 36253367
    57 8apo:Ak (3.2) BS04 rna N/A GO:0003735 ... N/A 36253367
    58 8apo:Ak (3.2) BS05 rna N/A GO:0003735 ... N/A 36253367
    59 8apo:Ak (3.2) BS06 rna N/A GO:0003735 ... N/A 36253367
    60 8apo:Al (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    61 8apo:Al (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    62 8apo:Al (3.2) BS03 rna N/A GO:0003735 ... N/A 36253367
    63 8apo:Am (3.2) BS01 rna N/A N/A N/A 36253367
    64 8apo:Am (3.2) BS02 rna N/A N/A N/A 36253367
    65 8apo:An (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    66 8apo:An (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    67 8apo:Ao (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    68 8apo:Ao (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    69 8apo:Ao (3.2) BS03 rna N/A GO:0003735 ... N/A 36253367
    70 8apo:Ao (3.2) BS04 rna N/A GO:0003735 ... N/A 36253367
    71 8apo:Ap (3.2) BS01 rna N/A GO:0003723 ... N/A 36253367
    72 8apo:Ap (3.2) BS02 rna N/A GO:0003723 ... N/A 36253367
    73 8apo:Ap (3.2) BS03 rna N/A GO:0003723 ... N/A 36253367
    74 8apo:Ap (3.2) BS04 rna N/A GO:0003723 ... N/A 36253367
    75 8apo:Ap (3.2) BS05 rna N/A GO:0003723 ... N/A 36253367
    76 8apo:Ap (3.2) BS06 rna N/A GO:0003723 ... N/A 36253367
    77 8apo:Aq (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    78 8apo:Aq (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    79 8apo:Aq (3.2) BS03 rna N/A GO:0003735 ... N/A 36253367
    80 8apo:Aq (3.2) BS04 rna N/A GO:0003735 ... N/A 36253367
    81 8apo:Aq (3.2) BS05 rna N/A GO:0003735 ... N/A 36253367
    82 8apo:Aq (3.2) BS06 peptide N/A GO:0003735 ... N/A 36253367
    83 8apo:Ar (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    84 8apo:Ar (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    85 8apo:Ar (3.2) BS03 peptide N/A GO:0003735 ... N/A 36253367
    86 8apo:At (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    87 8apo:Au (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    88 8apo:Au (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    89 8apo:Av (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    90 8apo:Ax (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    91 8apo:Ax (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    92 8apo:Ax (3.2) BS03 rna N/A GO:0003735 ... N/A 36253367
    93 8apo:Az (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    94 8apo:Az (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    95 8apo:Az (3.2) BS03 rna N/A GO:0003735 ... N/A 36253367
    96 8apo:Az (3.2) BS04 rna N/A GO:0003735 ... N/A 36253367
    97 8apo:BB (3.2) BS01 rna N/A N/A N/A 36253367
    98 8apo:BB (3.2) BS02 rna N/A N/A N/A 36253367
    99 8apo:BC (3.2) BS01 rna N/A N/A N/A 36253367
    100 8apo:BC (3.2) BS02 rna N/A N/A N/A 36253367
    101 8apo:BD (3.2) BS01 rna N/A N/A N/A 36253367
    102 8apo:BE (3.2) BS01 rna N/A N/A N/A 36253367
    103 8apo:BF (3.2) BS01 rna N/A N/A N/A 36253367
    104 8apo:BF (3.2) BS02 rna N/A N/A N/A 36253367
    105 8apo:BF (3.2) BS03 rna N/A N/A N/A 36253367
    106 8apo:Ba (3.2) BS01 peptide N/A N/A N/A 36253367
    107 8apo:Ba (3.2) BS02 peptide N/A N/A N/A 36253367
    108 8apo:Bb (3.2) BS01 peptide N/A GO:0003735 ... N/A 36253367
    109 8apo:Bc (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    110 8apo:Bd (3.2) BS01 rna N/A N/A N/A 36253367
    111 8apo:Bd (3.2) BS02 rna N/A N/A N/A 36253367
    112 8apo:Be (3.2) BS01 rna N/A GO:0003723 ... N/A 36253367
    113 8apo:Be (3.2) BS02 rna N/A GO:0003723 ... N/A 36253367
    114 8apo:Be (3.2) BS03 rna N/A GO:0003723 ... N/A 36253367
    115 8apo:Be (3.2) BS04 rna N/A GO:0003723 ... N/A 36253367
    116 8apo:Bf (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    117 8apo:Bg (3.2) BS01 rna N/A GO:0006412 ... N/A 36253367
    118 8apo:Bh (3.2) BS01 rna N/A N/A N/A 36253367
    119 8apo:Bh (3.2) BS02 rna N/A N/A N/A 36253367
    120 8apo:Bh (3.2) BS03 rna N/A N/A N/A 36253367
    121 8apo:Bi (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    122 8apo:Bi (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    123 8apo:Bi (3.2) BS03 rna N/A GO:0003735 ... N/A 36253367
    124 8apo:Bj (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    125 8apo:Bj (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    126 8apo:Bk (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    127 8apo:Bk (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    128 8apo:Bl (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    129 8apo:Bl (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    130 8apo:Bl (3.2) BS03 rna N/A GO:0003735 ... N/A 36253367
    131 8apo:Bm (3.2) BS01 rna N/A GO:0003676 ... N/A 36253367
    132 8apo:Bm (3.2) BS02 rna N/A GO:0003676 ... N/A 36253367
    133 8apo:Bm (3.2) BS03 MG N/A GO:0003676 ... N/A 36253367
    134 8apo:Bn (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    135 8apo:Bn (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    136 8apo:Bo (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    137 8apo:Bp (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    138 8apo:Bq (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    139 8apo:Bq (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    140 8apo:Bq (3.2) BS03 rna N/A GO:0003735 ... N/A 36253367
    141 8apo:Br (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    142 8apo:Bs (3.2) BS01 rna N/A GO:0003723 ... N/A 36253367
    143 8apo:Bs (3.2) BS02 rna N/A GO:0003723 ... N/A 36253367
    144 8apo:Bt (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    145 8apo:Bv (3.2) BS01 rna N/A N/A N/A 36253367
    146 8apo:Bv (3.2) BS02 rna N/A N/A N/A 36253367
    147 8apo:Bw (3.2) BS01 rna N/A N/A N/A 36253367
    148 8apo:Bw (3.2) BS02 MG N/A N/A N/A 36253367
    149 8apo:Bw (3.2) BS03 ATP N/A N/A N/A 36253367
    150 8apo:By (3.2) BS01 rna N/A N/A N/A 36253367
    151 8apo:Bz (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    152 8apo:Bz (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    153 8apo:Xa (3.2) BS01 rna N/A N/A N/A 36253367
    154 8apo:Xb (3.2) BS01 rna N/A N/A N/A 36253367
    155 8apo:Xc (3.2) BS01 rna N/A N/A N/A 36253367
    156 8apo:Xd (3.2) BS01 rna N/A N/A N/A 36253367
    157 8apo:Xd (3.2) BS02 rna N/A N/A N/A 36253367
    158 8apo:Xe (3.2) BS01 rna N/A N/A N/A 36253367
    159 8apo:Xe (3.2) BS02 rna N/A N/A N/A 36253367
    160 8apo:Xe (3.2) BS03 rna N/A N/A N/A 36253367
    161 8apo:Xf (3.2) BS01 rna N/A N/A N/A 36253367
    162 8apo:Xg (3.2) BS01 rna N/A N/A N/A 36253367
    163 8apo:Xg (3.2) BS02 rna N/A N/A N/A 36253367
    164 8apo:Ya (3.2) BS01 rna N/A N/A N/A 36253367
    165 8apo:Ya (3.2) BS02 rna N/A N/A N/A 36253367
    166 8apo:Yc (3.2) BS01 rna N/A N/A N/A 36253367
    167 8apo:Yd (3.2) BS01 rna N/A N/A N/A 36253367
    168 8apo:Ye (3.2) BS01 rna N/A N/A N/A 36253367
    169 8apo:Yl (3.2) BS01 rna N/A N/A N/A 36253367
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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