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BioLiP
Download all results in tab-seperated text for 38 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ap4:0 (3.0) BS01 rna ? GO:0000027 ... P0A7N9 36370110
    2 8ap4:1 (3.0) BS01 rna ? GO:0002181 ... P0A7P5 36370110
    3 8ap4:2 (3.0) BS01 rna ? GO:0002181 ... P0A7Q1 36370110
    4 8ap4:3 (3.0) BS01 rna ? GO:0002181 ... P0A7Q6 36370110
    5 8ap4:4 (3.0) BS01 rna ? GO:0002181 ... P0A7M9 36370110
    6 8ap4:A (3.0) BS01 rna ? GO:0003677 ... P0ACG8 36370110
    7 8ap4:A (3.0) BS02 rna ? GO:0003677 ... P0ACG8 36370110
    8 8ap4:c (3.0) BS01 rna ? GO:0000027 ... P60422 36370110
    9 8ap4:d (3.0) BS01 rna ? GO:0000027 ... P60438 36370110
    10 8ap4:e (3.0) BS01 rna ? GO:0001070 ... P60723 36370110
    11 8ap4:f (3.0) BS01 rna ? GO:0000027 ... P62399 36370110
    12 8ap4:f (3.0) BS02 rna ? GO:0000027 ... P62399 36370110
    13 8ap4:f (3.0) BS03 rna ? GO:0000027 ... P62399 36370110
    14 8ap4:g (3.0) BS01 rna ? GO:0000027 ... P0AG55 36370110
    15 8ap4:h (3.0) BS01 rna ? GO:0002181 ... P0A7R1 36370110
    16 8ap4:i (3.0) BS01 rna ? GO:0002181 ... P0AA10 36370110
    17 8ap4:j (3.0) BS01 rna ? GO:0002181 ... P0ADY3 36370110
    18 8ap4:k (3.0) BS01 rna ? GO:0002181 ... P02413 36370110
    19 8ap4:l (3.0) BS01 rna ? GO:0000027 ... P0ADY7 36370110
    20 8ap4:l (3.0) BS02 rna ? GO:0000027 ... P0ADY7 36370110
    21 8ap4:l (3.0) BS03 rna ? GO:0000027 ... P0ADY7 36370110
    22 8ap4:m (3.0) BS01 rna ? GO:0000027 ... P0AG44 36370110
    23 8ap4:n (3.0) BS01 rna ? GO:0002181 ... P0C018 36370110
    24 8ap4:n (3.0) BS02 rna ? GO:0002181 ... P0C018 36370110
    25 8ap4:o (3.0) BS01 rna ? GO:0000027 ... P0A7K6 36370110
    26 8ap4:p (3.0) BS01 rna ? GO:0000027 ... P0A7L3 36370110
    27 8ap4:q (3.0) BS01 rna ? GO:0002181 ... P0AG48 36370110
    28 8ap4:r (3.0) BS01 rna ? GO:0002181 ... P61175 36370110
    29 8ap4:s (3.0) BS01 rna ? GO:0000027 ... P0ADZ0 36370110
    30 8ap4:t (3.0) BS01 rna ? GO:0000027 ... P60624 36370110
    31 8ap4:u (3.0) BS01 rna ? GO:0000027 ... P68919 36370110
    32 8ap4:v (3.0) BS01 rna ? GO:0000027 ... P0A7L8 36370110
    33 8ap4:v (3.0) BS02 rna ? GO:0000027 ... P0A7L8 36370110
    34 8ap4:w (3.0) BS01 rna ? GO:0000027 ... P0A7M2 36370110
    35 8ap4:x (3.0) BS01 rna ? GO:0000027 ... P0A7M6 36370110
    36 8ap4:y (3.0) BS01 rna ? GO:0000027 ... P0AG51 36370110
    37 8ap4:y (3.0) BS02 rna ? GO:0000027 ... P0AG51 36370110
    38 8ap4:z (3.0) BS01 rna ? GO:0000027 ... P0A7N4 36370110
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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