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BioLiP
Download all results in tab-seperated text for 99 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8any:0 (2.85) BS01 rna ? GO:0003723 ... Q9BYC8 39134711
    2 8any:0 (2.85) BS02 ZN ? GO:0003723 ... Q9BYC8 39134711
    3 8any:1 (2.85) BS01 rna ? GO:0003735 ... O75394 39134711
    4 8any:2 (2.85) BS01 rna ? GO:0003735 ... Q9BQ48 39134711
    5 8any:3 (2.85) BS01 rna ? GO:0003735 ... Q9NZE8 39134711
    6 8any:4 (2.85) BS01 rna ? GO:0003735 ... Q9P0J6 39134711
    7 8any:4 (2.85) BS02 ZN ? GO:0003735 ... Q9P0J6 39134711
    8 8any:5 (2.85) BS01 rna ? GO:0003723 ... Q9BZE1 39134711
    9 8any:6 (2.85) BS01 rna ? GO:0005515 ... Q96DV4 39134711
    10 8any:6 (2.85) BS02 rna ? GO:0005515 ... Q96DV4 39134711
    11 8any:8 (2.85) BS01 rna ? GO:0003723 ... Q9NQ50 39134711
    12 8any:8 (2.85) BS02 rna ? GO:0003723 ... Q9NQ50 39134711
    13 8any:8 (2.85) BS03 rna ? GO:0003723 ... Q9NQ50 39134711
    14 8any:8 (2.85) BS04 rna ? GO:0003723 ... Q9NQ50 39134711
    15 8any:9 (2.85) BS01 rna ? GO:0003723 ... Q8IXM3 39134711
    16 8any:A0 (2.85) BS01 rna ? GO:0003735 ... P82930 39134711
    17 8any:A2 (2.85) BS01 rna ? GO:0001650 ... Q96BP2 39134711
    18 8any:A3 (2.85) BS01 rna ? GO:0005515 ... Q9NWT8 39134711
    19 8any:A3 (2.85) BS02 rna ? GO:0005515 ... Q9NWT8 39134711
    20 8any:A4 (2.85) BS01 rna ? GO:0003723 ... Q96EY7 39134711
    21 8any:A5 (2.85) BS01 rna ? GO:0000794 ... P42704 39134711
    22 8any:A6 (2.85) BS01 rna ? GO:0000961 ... Q9GZT3 39134711
    23 8any:AB (2.85) BS01 rna ? GO:0003735 ... Q9Y399 39134711
    24 8any:AB (2.85) BS02 MG ? GO:0003735 ... Q9Y399 39134711
    25 8any:AC (2.85) BS01 rna ? GO:0003723 ... Q96EL2 39134711
    26 8any:AD (2.85) BS01 rna ? GO:0003723 ... P82675 39134711
    27 8any:AD (2.85) BS02 rna ? GO:0003723 ... P82675 39134711
    28 8any:AE (2.85) BS01 rna ? GO:0003735 ... P82932 39134711
    29 8any:AF (2.85) BS01 rna ? GO:0000028 ... Q9Y2R9 39134711
    30 8any:AF (2.85) BS02 rna ? GO:0000028 ... Q9Y2R9 39134711
    31 8any:AF (2.85) BS03 rna ? GO:0000028 ... Q9Y2R9 39134711
    32 8any:AG (2.85) BS01 rna ? GO:0003723 ... P82933 39134711
    33 8any:AG (2.85) BS02 rna ? GO:0003723 ... P82933 39134711
    34 8any:AG (2.85) BS03 rna ? GO:0003723 ... P82933 39134711
    35 8any:AH (2.85) BS01 rna ? GO:0003674 ... P82664 39134711
    36 8any:AI (2.85) BS01 rna ? GO:0003723 ... P82912 39134711
    37 8any:AJ (2.85) BS01 rna ? GO:0003723 ... O15235 39134711
    38 8any:AK (2.85) BS01 rna ? GO:0003723 ... O60783 39134711
    39 8any:AL (2.85) BS01 rna ? GO:0003723 ... P82914 39134711
    40 8any:AL (2.85) BS02 NAD ? GO:0003723 ... P82914 39134711
    41 8any:AM (2.85) BS01 rna ? GO:0003735 ... Q9Y3D3 39134711
    42 8any:AN (2.85) BS01 rna ? GO:0003735 ... Q9Y2R5 39134711
    43 8any:AO (2.85) BS01 rna ? GO:0003735 ... Q9Y676 39134711
    44 8any:AO (2.85) BS02 ZN ? GO:0003735 ... Q9Y676 39134711
    45 8any:AP (2.85) BS01 rna ? GO:0003735 ... Q9Y3D5 39134711
    46 8any:AP (2.85) BS02 FES ? GO:0003735 ... Q9Y3D5 39134711
    47 8any:AQ (2.85) BS01 rna ? GO:0003723 ... P82921 39134711
    48 8any:AS (2.85) BS01 rna ? GO:0003723 ... Q9Y3D9 39134711
    49 8any:AT (2.85) BS01 rna ? GO:0003735 ... P82663 39134711
    50 8any:AT (2.85) BS02 FES ? GO:0003735 ... P82663 39134711
    51 8any:AU (2.85) BS01 rna ? GO:0003723 ... Q9BYN8 39134711
    52 8any:AV (2.85) BS01 rna ? GO:0000049 ... Q92552 39134711
    53 8any:AX (2.85) BS01 rna ? GO:0003723 ... P51398 39134711
    54 8any:AX (2.85) BS02 ATP ? GO:0003723 ... P51398 39134711
    55 8any:AX (2.85) BS03 GDP ? GO:0003723 ... P51398 39134711
    56 8any:AZ (2.85) BS01 rna ? GO:0003735 ... Q9Y291 39134711
    57 8any:D (2.85) BS01 rna ? GO:0003723 ... Q5T653 39134711
    58 8any:E (2.85) BS01 rna ? GO:0003723 ... P09001 39134711
    59 8any:F (2.85) BS01 rna ? GO:0003723 ... Q9BYD3 39134711
    60 8any:H (2.85) BS01 rna ? GO:0003723 ... Q9BYD2 39134711
    61 8any:I (2.85) BS01 rna ? GO:0003723 ... Q7Z7H8 39134711
    62 8any:J (2.85) BS01 rna ? GO:0003723 ... Q9Y3B7 39134711
    63 8any:K (2.85) BS01 rna ? GO:0003723 ... Q9BYD1 39134711
    64 8any:L (2.85) BS01 rna ? GO:0003723 ... Q6P1L8 39134711
    65 8any:M (2.85) BS01 rna ? GO:0003723 ... Q9P015 39134711
    66 8any:N (2.85) BS01 rna ? GO:0003735 ... Q9NX20 39134711
    67 8any:N (2.85) BS02 rna ? GO:0003735 ... Q9NX20 39134711
    68 8any:O (2.85) BS01 rna ? GO:0003735 ... Q9NRX2 39134711
    69 8any:P (2.85) BS01 rna ? GO:0003723 ... Q9H0U6 39134711
    70 8any:P (2.85) BS02 rna ? GO:0003723 ... Q9H0U6 39134711
    71 8any:Q (2.85) BS01 rna ? GO:0003735 ... P49406 39134711
    72 8any:R (2.85) BS01 rna ? GO:0003723 ... Q9BYC9 39134711
    73 8any:S (2.85) BS01 rna ? GO:0003723 ... Q7Z2W9 39134711
    74 8any:T (2.85) BS01 rna ? GO:0003723 ... Q9NWU5 39134711
    75 8any:U (2.85) BS01 rna ? GO:0001650 ... Q16540 39134711
    76 8any:V (2.85) BS01 rna ? GO:0003723 ... Q96A35 39134711
    77 8any:W (2.85) BS01 rna ? GO:0003723 ... Q9P0M9 39134711
    78 8any:X (2.85) BS01 rna ? GO:0003723 ... Q13084 39134711
    79 8any:Y (2.85) BS01 rna ? GO:0003674 ... Q9HD33 39134711
    80 8any:Z (2.85) BS01 rna ? GO:0003735 ... Q8TCC3 39134711
    81 8any:a (2.85) BS01 rna ? GO:0003723 ... Q9Y6G3 39134711
    82 8any:b (2.85) BS01 rna ? GO:0003723 ... Q8N983 39134711
    83 8any:c (2.85) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 39134711
    84 8any:d (2.85) BS01 rna ? GO:0003723 ... Q9BRJ2 39134711
    85 8any:e (2.85) BS01 rna ? GO:0003674 ... Q9H2W6 39134711
    86 8any:f (2.85) BS01 rna ? GO:0005515 ... Q96GC5 39134711
    87 8any:f (2.85) BS02 rna ? GO:0005515 ... Q96GC5 39134711
    88 8any:f (2.85) BS03 rna ? GO:0005515 ... Q96GC5 39134711
    89 8any:g (2.85) BS01 rna ? GO:0003735 ... Q13405 39134711
    90 8any:i (2.85) BS01 rna ? GO:0003735 ... Q4U2R6 39134711
    91 8any:j (2.85) BS01 rna ? GO:0003735 ... Q86TS9 39134711
    92 8any:l (2.85) BS01 rna ? GO:0003723 ... Q6P161 39134711
    93 8any:o (2.85) BS01 rna ? GO:0003735 ... Q9BQC6 39134711
    94 8any:q (2.85) BS01 rna ? GO:0005515 ... Q8TAE8 39134711
    95 8any:r (2.85) BS01 rna ? GO:0003735 ... Q9NVS2 39134711
    96 8any:r (2.85) BS02 FES ? GO:0003735 ... Q9NVS2 39134711
    97 8any:s (2.85) BS01 rna ? GO:0003723 ... Q9NP92 39134711
    98 8any:z (2.85) BS01 rna ? GO:0003723 ... Q9BYD6 39134711
    99 8any:z (2.85) BS02 rna ? GO:0003723 ... Q9BYD6 39134711
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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