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BioLiP
Download all results in tab-seperated text for 73 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8akn:0 (2.3) BS01 rna ? GO:0000027 ... P0A7N9 36997646
    2 8akn:1 (2.3) BS01 rna ? GO:0002181 ... P0A7P5 36997646
    3 8akn:2 (2.3) BS01 rna ? GO:0002181 ... P0A7Q1 36997646
    4 8akn:3 (2.3) BS01 rna ? GO:0002181 ... P0A7Q6 36997646
    5 8akn:3 (2.3) BS02 ZN ? GO:0002181 ... P0A7Q6 36997646
    6 8akn:4 (2.3) BS01 rna ? GO:0002181 ... P0A7M9 36997646
    7 8akn:4 (2.3) BS02 rna ? GO:0002181 ... P0A7M9 36997646
    8 8akn:4 (2.3) BS03 ZN ? GO:0002181 ... P0A7M9 36997646
    9 8akn:C (2.3) BS01 rna ? GO:0000028 ... P0A7V0 36997646
    10 8akn:D (2.3) BS01 rna ? GO:0000028 ... P0A7V3 36997646
    11 8akn:E (2.3) BS01 rna ? GO:0000028 ... P0A7V8 36997646
    12 8akn:F (2.3) BS01 rna ? GO:0000028 ... P0A7W1 36997646
    13 8akn:G (2.3) BS01 rna ? GO:0002181 ... P02358 36997646
    14 8akn:H (2.3) BS01 rna ? GO:0000028 ... P02359 36997646
    15 8akn:H (2.3) BS02 rna ? GO:0000028 ... P02359 36997646
    16 8akn:I (2.3) BS01 rna ? GO:0000028 ... P0A7W7 36997646
    17 8akn:J (2.3) BS01 rna ? GO:0000049 ... P0A7X3 36997646
    18 8akn:J (2.3) BS02 rna ? GO:0000049 ... P0A7X3 36997646
    19 8akn:K (2.3) BS01 rna ? GO:0000049 ... P0A7R5 36997646
    20 8akn:L (2.3) BS01 rna ? GO:0002181 ... P0A7R9 36997646
    21 8akn:M (2.3) BS01 rna ? GO:0000049 ... P0A7S3 36997646
    22 8akn:N (2.3) BS01 rna ? GO:0000049 ... P0A7S9 36997646
    23 8akn:N (2.3) BS02 rna ? GO:0000049 ... P0A7S9 36997646
    24 8akn:O (2.3) BS01 rna ? GO:0000028 ... P0AG59 36997646
    25 8akn:P (2.3) BS01 rna ? GO:0000028 ... P0ADZ4 36997646
    26 8akn:P (2.3) BS02 rna ? GO:0000028 ... P0ADZ4 36997646
    27 8akn:Q (2.3) BS01 rna ? GO:0000028 ... P0A7T3 36997646
    28 8akn:R (2.3) BS01 rna ? GO:0000028 ... P0AG63 36997646
    29 8akn:S (2.3) BS01 rna ? GO:0002181 ... P0A7T7 36997646
    30 8akn:T (2.3) BS01 rna ? GO:0000028 ... P0A7U3 36997646
    31 8akn:U (2.3) BS01 rna ? GO:0000028 ... P0A7U7 36997646
    32 8akn:V (2.3) BS01 rna ? GO:0000028 ... P68679 36997646
    33 8akn:W (2.3) BS01 rna ? GO:0003747 ... P0A7I0 36997646
    34 8akn:W (2.3) BS02 rna ? GO:0003747 ... P0A7I0 36997646
    35 8akn:W (2.3) BS03 rna ? GO:0003747 ... P0A7I0 36997646
    36 8akn:W (2.3) BS04 rna ? GO:0003747 ... P0A7I0 36997646
    37 8akn:c (2.3) BS01 rna ? GO:0000027 ... P60422 36997646
    38 8akn:c (2.3) BS02 rna ? GO:0000027 ... P60422 36997646
    39 8akn:d (2.3) BS01 rna ? GO:0000027 ... P60438 36997646
    40 8akn:e (2.3) BS01 peptide ? GO:0001070 ... P60723 36997646
    41 8akn:e (2.3) BS02 rna ? GO:0001070 ... P60723 36997646
    42 8akn:f (2.3) BS01 rna ? GO:0000027 ... P62399 36997646
    43 8akn:f (2.3) BS02 rna ? GO:0000027 ... P62399 36997646
    44 8akn:f (2.3) BS03 rna ? GO:0000027 ... P62399 36997646
    45 8akn:g (2.3) BS01 rna ? GO:0000027 ... P0AG55 36997646
    46 8akn:h (2.3) BS01 rna ? GO:0002181 ... P0A7R1 36997646
    47 8akn:i (2.3) BS01 rna ? GO:0002181 ... P0AA10 36997646
    48 8akn:j (2.3) BS01 rna ? GO:0002181 ... P0ADY3 36997646
    49 8akn:j (2.3) BS02 rna ? GO:0002181 ... P0ADY3 36997646
    50 8akn:k (2.3) BS01 rna ? GO:0002181 ... P02413 36997646
    51 8akn:l (2.3) BS01 rna ? GO:0000027 ... P0ADY7 36997646
    52 8akn:l (2.3) BS02 rna ? GO:0000027 ... P0ADY7 36997646
    53 8akn:m (2.3) BS01 rna ? GO:0000027 ... P0AG44 36997646
    54 8akn:n (2.3) BS01 rna ? GO:0002181 ... P0C018 36997646
    55 8akn:n (2.3) BS02 rna ? GO:0002181 ... P0C018 36997646
    56 8akn:o (2.3) BS01 rna ? GO:0000027 ... P0A7K6 36997646
    57 8akn:o (2.3) BS02 rna ? GO:0000027 ... P0A7K6 36997646
    58 8akn:p (2.3) BS01 rna ? GO:0000027 ... P0A7L3 36997646
    59 8akn:q (2.3) BS01 rna ? GO:0002181 ... P0AG48 36997646
    60 8akn:r (2.3) BS01 peptide ? GO:0002181 ... P61175 36997646
    61 8akn:r (2.3) BS02 rna ? GO:0002181 ... P61175 36997646
    62 8akn:s (2.3) BS01 rna ? GO:0000027 ... P0ADZ0 36997646
    63 8akn:t (2.3) BS01 rna ? GO:0000027 ... P60624 36997646
    64 8akn:u (2.3) BS01 rna ? GO:0000027 ... P68919 36997646
    65 8akn:u (2.3) BS02 rna ? GO:0000027 ... P68919 36997646
    66 8akn:v (2.3) BS01 rna ? GO:0000027 ... P0A7L8 36997646
    67 8akn:v (2.3) BS02 rna ? GO:0000027 ... P0A7L8 36997646
    68 8akn:w (2.3) BS01 rna ? GO:0000027 ... P0A7M2 36997646
    69 8akn:w (2.3) BS02 rna ? GO:0000027 ... P0A7M2 36997646
    70 8akn:x (2.3) BS01 rna ? GO:0000027 ... P0A7M6 36997646
    71 8akn:y (2.3) BS01 rna ? GO:0000027 ... P0AG51 36997646
    72 8akn:y (2.3) BS02 rna ? GO:0000027 ... P0AG51 36997646
    73 8akn:z (2.3) BS01 rna ? GO:0000027 ... P0A7N4 36997646
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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