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BioLiP
Download all results in tab-seperated text for 102 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7zpq:AA (3.47) BS01 rna ? GO:0003735 ... P32905 36801861
    2 7zpq:AB (3.47) BS01 rna ? GO:0000462 ... P33442 36801861
    3 7zpq:AC (3.47) BS01 rna ? GO:0003723 ... P25443 36801861
    4 7zpq:AD (3.47) BS01 rna ? GO:0000054 ... P05750 36801861
    5 7zpq:AE (3.47) BS01 rna ? GO:0002181 ... P0CX35 36801861
    6 7zpq:AF (3.47) BS01 rna ? GO:0000028 ... P26783 36801861
    7 7zpq:AG (3.47) BS01 rna ? GO:0000462 ... P0CX37 36801861
    8 7zpq:AH (3.47) BS01 rna ? GO:0002181 ... P26786 36801861
    9 7zpq:AI (3.47) BS01 rna ? GO:0000462 ... P0CX39 36801861
    10 7zpq:AI (3.47) BS02 rna ? GO:0000462 ... P0CX39 36801861
    11 7zpq:AJ (3.47) BS01 rna ? GO:0000462 ... O13516 36801861
    12 7zpq:AK (3.47) BS01 rna ? N/A Q08745 36801861
    13 7zpq:AL (3.47) BS01 rna ? GO:0000028 ... P0CX47 36801861
    14 7zpq:AM (3.47) BS01 rna ? GO:0003735 ... P48589 36801861
    15 7zpq:AN (3.47) BS01 rna ? GO:0000462 ... P05756 36801861
    16 7zpq:AO (3.47) BS01 rna ? GO:0000028 ... P39516 36801861
    17 7zpq:AP (3.47) BS01 rna ? GO:0003723 ... Q01855 36801861
    18 7zpq:AQ (3.47) BS01 rna ? GO:0000462 ... P0CX51 36801861
    19 7zpq:AR (3.47) BS01 rna ? GO:0000028 ... P14127 36801861
    20 7zpq:AS (3.47) BS01 rna ? GO:0000054 ... P0CX55 36801861
    21 7zpq:AT (3.47) BS01 rna ? GO:0000028 ... P07280 36801861
    22 7zpq:AU (3.47) BS01 rna ? GO:0003723 ... P38701 36801861
    23 7zpq:AW (3.47) BS01 rna ? GO:0002181 ... P0C0W1 36801861
    24 7zpq:AX (3.47) BS01 rna ? GO:0000462 ... P0CX29 36801861
    25 7zpq:AY (3.47) BS01 rna ? GO:0000462 ... P0CX31 36801861
    26 7zpq:AZ (3.47) BS01 rna ? N/A Q3E792 36801861
    27 7zpq:Aa (3.47) BS01 rna ? GO:0003735 ... P39939 36801861
    28 7zpq:Ab (3.47) BS01 rna ? GO:0000028 ... P35997 36801861
    29 7zpq:Ac (3.47) BS01 rna ? GO:0000028 ... Q3E7X9 36801861
    30 7zpq:Ad (3.47) BS01 rna ? GO:0002181 ... P41057 36801861
    31 7zpq:Ad (3.47) BS02 ZN ? GO:0002181 ... P41057 36801861
    32 7zpq:Ae (3.47) BS01 rna ? GO:0002181 ... P0CX33 36801861
    33 7zpq:Af (3.47) BS01 rna ? GO:0003735 ... P05759 36801861
    34 7zpq:Af (3.47) BS02 ZN ? GO:0003735 ... P05759 36801861
    35 7zpq:Ag (3.47) BS01 rna ? GO:0001965 ... P38011 36801861
    36 7zpq:BA (3.47) BS01 rna ? GO:0002181 ... P0CX45 36801861
    37 7zpq:BA (3.47) BS02 rna ? GO:0002181 ... P0CX45 36801861
    38 7zpq:BB (3.47) BS01 rna ? GO:0000027 ... P14126 36801861
    39 7zpq:BC (3.47) BS01 rna ? GO:0002181 ... P10664 36801861
    40 7zpq:BC (3.47) BS02 rna ? GO:0002181 ... P10664 36801861
    41 7zpq:BD (3.47) BS01 rna ? GO:0000027 ... P26321 36801861
    42 7zpq:BD (3.47) BS02 rna ? GO:0000027 ... P26321 36801861
    43 7zpq:BE (3.47) BS01 rna ? GO:0000027 ... P05739 36801861
    44 7zpq:BF (3.47) BS01 rna ? GO:0000463 ... P05737 36801861
    45 7zpq:BF (3.47) BS02 rna ? GO:0000463 ... P05737 36801861
    46 7zpq:BG (3.47) BS01 rna ? GO:0000470 ... P17076 36801861
    47 7zpq:BG (3.47) BS02 rna ? GO:0000470 ... P17076 36801861
    48 7zpq:BH (3.47) BS01 rna ? GO:0002181 ... P05738 36801861
    49 7zpq:BI (3.47) BS01 rna ? GO:0000027 ... P41805 36801861
    50 7zpq:BI (3.47) BS02 rna ? GO:0000027 ... P41805 36801861
    51 7zpq:BJ (3.47) BS01 rna ? GO:0000027 ... Q3E757 36801861
    52 7zpq:BJ (3.47) BS02 rna ? GO:0000027 ... Q3E757 36801861
    53 7zpq:BJ (3.47) BS03 rna ? GO:0000027 ... Q3E757 36801861
    54 7zpq:BK (3.47) BS01 rna ? GO:0002181 ... Q12690 36801861
    55 7zpq:BK (3.47) BS02 rna ? GO:0002181 ... Q12690 36801861
    56 7zpq:BL (3.47) BS01 rna ? GO:0000027 ... P36105 36801861
    57 7zpq:BM (3.47) BS01 rna ? GO:0002181 ... P05748 36801861
    58 7zpq:BM (3.47) BS02 rna ? GO:0002181 ... P05748 36801861
    59 7zpq:BN (3.47) BS01 rna ? GO:0000470 ... P26784 36801861
    60 7zpq:BO (3.47) BS01 rna ? GO:0000448 ... P05740 36801861
    61 7zpq:BO (3.47) BS02 rna ? GO:0000448 ... P05740 36801861
    62 7zpq:BP (3.47) BS01 rna ? GO:0002181 ... P0CX49 36801861
    63 7zpq:BQ (3.47) BS01 rna ? GO:0002181 ... P0CX82 36801861
    64 7zpq:BQ (3.47) BS02 rna ? GO:0002181 ... P0CX82 36801861
    65 7zpq:BR (3.47) BS01 rna ? GO:0002181 ... P0CX23 36801861
    66 7zpq:BR (3.47) BS02 rna ? GO:0002181 ... P0CX23 36801861
    67 7zpq:BS (3.47) BS01 rna ? GO:0002181 ... Q02753 36801861
    68 7zpq:BS (3.47) BS02 rna ? GO:0002181 ... Q02753 36801861
    69 7zpq:BT (3.47) BS01 rna ? GO:0003735 ... P05749 36801861
    70 7zpq:BU (3.47) BS01 rna ? GO:0002181 ... P0CX41 36801861
    71 7zpq:BV (3.47) BS01 rna ? N/A P04449 36801861
    72 7zpq:BW (3.47) BS01 rna ? GO:0003735 ... P04456 36801861
    73 7zpq:BW (3.47) BS02 rna ? GO:0003735 ... P04456 36801861
    74 7zpq:BX (3.47) BS01 rna ? GO:0002181 ... P05743 36801861
    75 7zpq:BX (3.47) BS02 rna ? GO:0002181 ... P05743 36801861
    76 7zpq:BY (3.47) BS01 rna ? GO:0002181 ... P0C2H6 36801861
    77 7zpq:BZ (3.47) BS01 rna ? GO:0002181 ... P02406 36801861
    78 7zpq:Ba (3.47) BS01 rna ? GO:0002181 ... P05747 36801861
    79 7zpq:Bb (3.47) BS01 rna ? GO:0002181 ... P14120 36801861
    80 7zpq:Bc (3.47) BS01 rna ? GO:0002181 ... P0C2H8 36801861
    81 7zpq:Bd (3.47) BS01 rna ? GO:0002181 ... P38061 36801861
    82 7zpq:Be (3.47) BS01 rna ? GO:0000027 ... P05744 36801861
    83 7zpq:Bf (3.47) BS01 rna ? GO:0002181 ... P87262 36801861
    84 7zpq:Bf (3.47) BS02 ZN ? GO:0002181 ... P87262 36801861
    85 7zpq:Bg (3.47) BS01 rna ? GO:0000463 ... P0CX84 36801861
    86 7zpq:Bg (3.47) BS02 rna ? GO:0000463 ... P0CX84 36801861
    87 7zpq:Bh (3.47) BS01 rna ? GO:0002181 ... P05745 36801861
    88 7zpq:Bi (3.47) BS01 rna ? GO:0000448 ... P49166 36801861
    89 7zpq:Bi (3.47) BS02 rna ? GO:0000448 ... P49166 36801861
    90 7zpq:Bi (3.47) BS03 ZN ? GO:0000448 ... P49166 36801861
    91 7zpq:Bj (3.47) BS01 rna ? GO:0002181 ... P49167 36801861
    92 7zpq:Bk (3.47) BS01 rna ? GO:0002181 ... P04650 36801861
    93 7zpq:Bk (3.47) BS02 rna ? GO:0002181 ... P04650 36801861
    94 7zpq:Bl (3.47) BS01 rna ? GO:0003735 ... P0CH08 36801861
    95 7zpq:Bl (3.47) BS02 ZN ? GO:0003735 ... P0CH08 36801861
    96 7zpq:Bn (3.47) BS01 rna ? GO:0002181 ... P0CX27 36801861
    97 7zpq:Bn (3.47) BS02 ZN ? GO:0002181 ... P0CX27 36801861
    98 7zpq:Bo (3.47) BS01 rna ? GO:0002181 ... P0CX25 36801861
    99 7zpq:Bo (3.47) BS02 ZN ? GO:0002181 ... P0CX25 36801861
    100 7zpq:CA (3.47) BS01 rna 3.6.4.13 GO:0002181 ... P53327 36801861
    101 7zpq:CC (3.47) BS01 ZN ? GO:0005515 ... P36119 36801861
    102 7zpq:CC (3.47) BS02 ZN ? GO:0005515 ... P36119 36801861
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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