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BioLiP
Download all results in tab-seperated text for 115 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7zcu:A (2.7) BS01 BCL ? GO:0005886 ... P35101 36251992
    2 7zcu:A (2.7) BS02 IRM ? GO:0005886 ... P35101 36251992
    3 7zcu:A (2.7) BS03 BCL ? GO:0005886 ... P35101 36251992
    4 7zcu:A (2.7) BS04 IRM ? GO:0005886 ... P35101 36251992
    5 7zcu:A (2.7) BS05 BCL ? GO:0005886 ... P35101 36251992
    6 7zcu:A (2.7) BS06 BCL ? GO:0005886 ... P35101 36251992
    7 7zcu:A (2.7) BS07 IRM ? GO:0005886 ... P35101 36251992
    8 7zcu:B (2.7) BS01 BCL ? GO:0005886 ... P35106 36251992
    9 7zcu:B (2.7) BS02 BCL ? GO:0005886 ... P35106 36251992
    10 7zcu:B (2.7) BS03 BCL ? GO:0005886 ... P35106 36251992
    11 7zcu:B (2.7) BS04 IRM ? GO:0005886 ... P35106 36251992
    12 7zcu:C (2.7) BS01 IRM ? GO:0005886 ... P35101 36251992
    13 7zcu:C (2.7) BS02 IRM ? GO:0005886 ... P35101 36251992
    14 7zcu:C (2.7) BS03 BCL ? GO:0005886 ... P35101 36251992
    15 7zcu:C (2.7) BS04 BCL ? GO:0005886 ... P35101 36251992
    16 7zcu:C (2.7) BS05 BCL ? GO:0005886 ... P35101 36251992
    17 7zcu:C (2.7) BS06 IRM ? GO:0005886 ... P35101 36251992
    18 7zcu:D (2.7) BS01 IRM ? GO:0005886 ... P35106 36251992
    19 7zcu:D (2.7) BS02 BCL ? GO:0005886 ... P35106 36251992
    20 7zcu:D (2.7) BS03 BCL ? GO:0005886 ... P35106 36251992
    21 7zcu:D (2.7) BS04 BCL ? GO:0005886 ... P35106 36251992
    22 7zcu:D (2.7) BS05 BCL ? GO:0005886 ... P35106 36251992
    23 7zcu:E (2.7) BS01 IRM ? GO:0005886 ... P35101 36251992
    24 7zcu:E (2.7) BS02 BCL ? GO:0005886 ... P35101 36251992
    25 7zcu:E (2.7) BS03 BCL ? GO:0005886 ... P35101 36251992
    26 7zcu:E (2.7) BS04 BCL ? GO:0005886 ... P35101 36251992
    27 7zcu:E (2.7) BS05 IRM ? GO:0005886 ... P35101 36251992
    28 7zcu:E (2.7) BS06 BCL ? GO:0005886 ... P35101 36251992
    29 7zcu:E (2.7) BS07 IRM ? GO:0005886 ... P35101 36251992
    30 7zcu:F (2.7) BS01 BCL ? GO:0005886 ... P35106 36251992
    31 7zcu:F (2.7) BS02 BCL ? GO:0005886 ... P35106 36251992
    32 7zcu:F (2.7) BS03 BCL ? GO:0005886 ... P35106 36251992
    33 7zcu:F (2.7) BS04 IRM ? GO:0005886 ... P35106 36251992
    34 7zcu:G (2.7) BS01 BCL ? GO:0005886 ... P35101 36251992
    35 7zcu:G (2.7) BS02 IRM ? GO:0005886 ... P35101 36251992
    36 7zcu:G (2.7) BS03 BCL ? GO:0005886 ... P35101 36251992
    37 7zcu:G (2.7) BS04 BCL ? GO:0005886 ... P35101 36251992
    38 7zcu:G (2.7) BS05 BCL ? GO:0005886 ... P35101 36251992
    39 7zcu:G (2.7) BS06 IRM ? GO:0005886 ... P35101 36251992
    40 7zcu:G (2.7) BS07 BCL ? GO:0005886 ... P35101 36251992
    41 7zcu:G (2.7) BS08 IRM ? GO:0005886 ... P35101 36251992
    42 7zcu:H (2.7) BS01 BCL ? GO:0005886 ... P35106 36251992
    43 7zcu:H (2.7) BS02 BCL ? GO:0005886 ... P35106 36251992
    44 7zcu:H (2.7) BS03 BCL ? GO:0005886 ... P35106 36251992
    45 7zcu:H (2.7) BS04 BCL ? GO:0005886 ... P35106 36251992
    46 7zcu:H (2.7) BS05 IRM ? GO:0005886 ... P35106 36251992
    47 7zcu:H (2.7) BS06 BCL ? GO:0005886 ... P35106 36251992
    48 7zcu:I (2.7) BS01 BCL ? GO:0005886 ... P35101 36251992
    49 7zcu:I (2.7) BS02 IRM ? GO:0005886 ... P35101 36251992
    50 7zcu:I (2.7) BS03 BCL ? GO:0005886 ... P35101 36251992
    51 7zcu:I (2.7) BS04 BCL ? GO:0005886 ... P35101 36251992
    52 7zcu:I (2.7) BS05 IRM ? GO:0005886 ... P35101 36251992
    53 7zcu:I (2.7) BS06 IRM ? GO:0005886 ... P35101 36251992
    54 7zcu:I (2.7) BS07 BCL ? GO:0005886 ... P35101 36251992
    55 7zcu:J (2.7) BS01 BCL ? GO:0005886 ... P35106 36251992
    56 7zcu:J (2.7) BS02 BCL ? GO:0005886 ... P35106 36251992
    57 7zcu:J (2.7) BS03 BCL ? GO:0005886 ... P35106 36251992
    58 7zcu:J (2.7) BS04 BCL ? GO:0005886 ... P35106 36251992
    59 7zcu:J (2.7) BS05 IRM ? GO:0005886 ... P35106 36251992
    60 7zcu:J (2.7) BS06 BCL ? GO:0005886 ... P35106 36251992
    61 7zcu:K (2.7) BS01 BCL ? GO:0005886 ... P35101 36251992
    62 7zcu:K (2.7) BS02 IRM ? GO:0005886 ... P35101 36251992
    63 7zcu:K (2.7) BS03 BCL ? GO:0005886 ... P35101 36251992
    64 7zcu:K (2.7) BS04 IRM ? GO:0005886 ... P35101 36251992
    65 7zcu:K (2.7) BS05 BCL ? GO:0005886 ... P35101 36251992
    66 7zcu:K (2.7) BS06 BCL ? GO:0005886 ... P35101 36251992
    67 7zcu:K (2.7) BS07 IRM ? GO:0005886 ... P35101 36251992
    68 7zcu:L (2.7) BS01 BCL ? GO:0005886 ... P35106 36251992
    69 7zcu:L (2.7) BS02 BCL ? GO:0005886 ... P35106 36251992
    70 7zcu:L (2.7) BS03 BCL ? GO:0005886 ... P35106 36251992
    71 7zcu:L (2.7) BS04 IRM ? GO:0005886 ... P35106 36251992
    72 7zcu:L (2.7) BS05 BCL ? GO:0005886 ... P35106 36251992
    73 7zcu:M (2.7) BS01 BCL ? GO:0005886 ... P35101 36251992
    74 7zcu:M (2.7) BS02 IRM ? GO:0005886 ... P35101 36251992
    75 7zcu:M (2.7) BS03 BCL ? GO:0005886 ... P35101 36251992
    76 7zcu:M (2.7) BS04 BCL ? GO:0005886 ... P35101 36251992
    77 7zcu:M (2.7) BS05 IRM ? GO:0005886 ... P35101 36251992
    78 7zcu:M (2.7) BS06 BCL ? GO:0005886 ... P35101 36251992
    79 7zcu:M (2.7) BS07 IRM ? GO:0005886 ... P35101 36251992
    80 7zcu:N (2.7) BS01 BCL ? GO:0005886 ... P35106 36251992
    81 7zcu:N (2.7) BS02 BCL ? GO:0005886 ... P35106 36251992
    82 7zcu:N (2.7) BS03 BCL ? GO:0005886 ... P35106 36251992
    83 7zcu:N (2.7) BS04 BCL ? GO:0005886 ... P35106 36251992
    84 7zcu:N (2.7) BS05 IRM ? GO:0005886 ... P35106 36251992
    85 7zcu:O (2.7) BS01 BCL ? GO:0005886 ... P35101 36251992
    86 7zcu:O (2.7) BS02 IRM ? GO:0005886 ... P35101 36251992
    87 7zcu:O (2.7) BS03 BCL ? GO:0005886 ... P35101 36251992
    88 7zcu:O (2.7) BS04 BCL ? GO:0005886 ... P35101 36251992
    89 7zcu:O (2.7) BS05 IRM ? GO:0005886 ... P35101 36251992
    90 7zcu:O (2.7) BS06 BCL ? GO:0005886 ... P35101 36251992
    91 7zcu:O (2.7) BS07 IRM ? GO:0005886 ... P35101 36251992
    92 7zcu:P (2.7) BS01 BCL ? GO:0005886 ... P35106 36251992
    93 7zcu:P (2.7) BS02 BCL ? GO:0005886 ... P35106 36251992
    94 7zcu:P (2.7) BS03 BCL ? GO:0005886 ... P35106 36251992
    95 7zcu:P (2.7) BS04 BCL ? GO:0005886 ... P35106 36251992
    96 7zcu:P (2.7) BS05 IRM ? GO:0005886 ... P35106 36251992
    97 7zcu:P (2.7) BS06 BCL ? GO:0005886 ... P35106 36251992
    98 7zcu:Q (2.7) BS01 BCL ? GO:0005886 ... P35101 36251992
    99 7zcu:Q (2.7) BS02 IRM ? GO:0005886 ... P35101 36251992
    100 7zcu:Q (2.7) BS03 BCL ? GO:0005886 ... P35101 36251992
    101 7zcu:Q (2.7) BS04 IRM ? GO:0005886 ... P35101 36251992
    102 7zcu:Q (2.7) BS05 BCL ? GO:0005886 ... P35101 36251992
    103 7zcu:Q (2.7) BS06 BCL ? GO:0005886 ... P35101 36251992
    104 7zcu:Q (2.7) BS07 IRM ? GO:0005886 ... P35101 36251992
    105 7zcu:R (2.7) BS01 BCL ? GO:0005886 ... P35106 36251992
    106 7zcu:R (2.7) BS02 BCL ? GO:0005886 ... P35106 36251992
    107 7zcu:R (2.7) BS03 BCL ? GO:0005886 ... P35106 36251992
    108 7zcu:R (2.7) BS04 BCL ? GO:0005886 ... P35106 36251992
    109 7zcu:R (2.7) BS05 IRM ? GO:0005886 ... P35106 36251992
    110 7zcu:S (2.7) BS01 BCL ? N/A Q6N9P5 36251992
    111 7zcu:S (2.7) BS02 BCL ? N/A Q6N9P5 36251992
    112 7zcu:S (2.7) BS03 BCL ? N/A Q6N9P5 36251992
    113 7zcu:S (2.7) BS04 BCL ? N/A Q6N9P5 36251992
    114 7zcu:S (2.7) BS05 BCL ? N/A Q6N9P5 36251992
    115 7zcu:S (2.7) BS06 BCL ? N/A Q6N9P5 36251992
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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