Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7yi5:A (3.96) BS01 dna ? GO:0000086 ... P22579 37468628
    2 7yi5:A (3.96) BS02 dna ? GO:0000086 ... P22579 37468628
    3 7yi5:B (3.96) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 37468628
    4 7yi5:C (3.96) BS01 dna ? GO:0000122 ... Q12432 37468628
    5 7yi5:D (3.96) BS01 peptide ? GO:0000118 ... Q04779 37468628
    6 7yi5:D (3.96) BS02 ZN ? GO:0000118 ... Q04779 37468628
    7 7yi5:D (3.96) BS03 ZN ? GO:0000118 ... Q04779 37468628
    8 7yi5:D (3.96) BS04 ZN ? GO:0000118 ... Q04779 37468628
    9 7yi5:D (3.96) BS05 ZN ? GO:0000118 ... Q04779 37468628
    10 7yi5:E (3.96) BS01 dna ? GO:0000122 ... Q12432 37468628
    11 7yi5:G (3.96) BS01 dna ? GO:0000786 ... P84233 37468628
    12 7yi5:G (3.96) BS02 dna ? GO:0000786 ... P84233 37468628
    13 7yi5:H (3.96) BS01 dna ? GO:0000786 ... P62799 37468628
    14 7yi5:H (3.96) BS02 dna ? GO:0000786 ... P62799 37468628
    15 7yi5:I (3.96) BS01 dna ? GO:0000786 ... P06897 37468628
    16 7yi5:I (3.96) BS02 dna ? GO:0000786 ... P06897 37468628
    17 7yi5:J (3.96) BS01 dna ? GO:0000786 ... P02281 37468628
    18 7yi5:J (3.96) BS02 dna ? GO:0000786 ... P02281 37468628
    19 7yi5:K (3.96) BS01 dna ? GO:0000786 ... P84233 37468628
    20 7yi5:K (3.96) BS02 dna ? GO:0000786 ... P84233 37468628
    21 7yi5:L (3.96) BS01 dna ? GO:0000786 ... P62799 37468628
    22 7yi5:L (3.96) BS02 dna ? GO:0000786 ... P62799 37468628
    23 7yi5:M (3.96) BS01 dna ? GO:0000786 ... P06897 37468628
    24 7yi5:M (3.96) BS02 dna ? GO:0000786 ... P06897 37468628
    25 7yi5:N (3.96) BS01 dna ? GO:0000786 ... P02281 37468628
    26 7yi5:N (3.96) BS02 dna ? GO:0000786 ... P02281 37468628
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218