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BioLiP
Download all results in tab-seperated text for 70 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7y6f:A (2.7) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    2 7y6f:A (2.7) BS02 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    3 7y6f:A (2.7) BS03 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    4 7y6f:B (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    5 7y6f:B (2.7) BS02 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    6 7y6f:B (2.7) BS03 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    7 7y6f:C (2.7) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    8 7y6f:C (2.7) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    9 7y6f:D (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    10 7y6f:D (2.7) BS02 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    11 7y6f:D (2.7) BS03 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    12 7y6f:E (2.7) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    13 7y6f:E (2.7) BS02 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14 7y6f:E (2.7) BS03 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    15 7y6f:F (2.7) BS01 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    16 7y6f:F (2.7) BS02 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    17 7y6f:F (2.7) BS03 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    18 7y6f:G (2.7) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    19 7y6f:G (2.7) BS02 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    20 7y6f:G (2.7) BS03 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    21 7y6f:H (2.7) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    22 7y6f:H (2.7) BS02 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    23 7y6f:H (2.7) BS03 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    24 7y6f:I (2.7) BS01 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    25 7y6f:I (2.7) BS02 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    26 7y6f:I (2.7) BS03 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    27 7y6f:J (2.7) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    28 7y6f:J (2.7) BS02 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    29 7y6f:J (2.7) BS03 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    30 7y6f:K (2.7) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    31 7y6f:K (2.7) BS02 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    32 7y6f:K (2.7) BS03 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    33 7y6f:L (2.7) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    34 7y6f:L (2.7) BS02 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    35 7y6f:L (2.7) BS03 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    36 7y6f:M (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    37 7y6f:M (2.7) BS02 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    38 7y6f:M (2.7) BS03 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    39 7y6f:N (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    40 7y6f:N (2.7) BS02 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    41 7y6f:O (2.7) BS01 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    42 7y6f:O (2.7) BS02 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    43 7y6f:O (2.7) BS03 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    44 7y6f:P (2.7) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    45 7y6f:P (2.7) BS02 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    46 7y6f:P (2.7) BS03 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    47 7y6f:Q (2.7) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    48 7y6f:Q (2.7) BS02 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    49 7y6f:Q (2.7) BS03 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    50 7y6f:R (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    51 7y6f:R (2.7) BS02 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    52 7y6f:R (2.7) BS03 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    53 7y6f:S (2.7) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    54 7y6f:S (2.7) BS02 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    55 7y6f:S (2.7) BS03 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    56 7y6f:T (2.7) BS01 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    57 7y6f:T (2.7) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    58 7y6f:T (2.7) BS03 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    59 7y6f:U (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    60 7y6f:U (2.7) BS02 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    61 7y6f:U (2.7) BS03 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    62 7y6f:V (2.7) BS01 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    63 7y6f:V (2.7) BS02 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    64 7y6f:V (2.7) BS03 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    65 7y6f:W (2.7) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    66 7y6f:W (2.7) BS02 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    67 7y6f:W (2.7) BS03 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    68 7y6f:X (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    69 7y6f:X (2.7) BS02 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    70 7y6f:X (2.7) BS03 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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