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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7y3m:A (2.723) BS01 dna ? N/A Q9UJQ4 36257403
    2 7y3m:A (2.723) BS02 dna ? N/A Q9UJQ4 36257403
    3 7y3m:A (2.723) BS03 ZN ? N/A Q9UJQ4 36257403
    4 7y3m:A (2.723) BS04 ZN ? N/A Q9UJQ4 36257403
    5 7y3m:B (2.723) BS01 dna ? N/A Q9UJQ4 36257403
    6 7y3m:B (2.723) BS02 dna ? N/A Q9UJQ4 36257403
    7 7y3m:B (2.723) BS03 ZN ? N/A Q9UJQ4 36257403
    8 7y3m:B (2.723) BS04 ZN ? N/A Q9UJQ4 36257403
    9 7y3m:C (2.723) BS01 dna ? N/A Q9UJQ4 36257403
    10 7y3m:C (2.723) BS02 ZN ? N/A Q9UJQ4 36257403
    11 7y3m:C (2.723) BS03 ZN ? N/A Q9UJQ4 36257403
    12 7y3m:F (2.723) BS01 dna ? N/A Q9UJQ4 36257403
    13 7y3m:F (2.723) BS02 dna ? N/A Q9UJQ4 36257403
    14 7y3m:F (2.723) BS03 ZN ? N/A Q9UJQ4 36257403
    15 7y3m:F (2.723) BS04 ZN ? N/A Q9UJQ4 36257403
    16 7y3m:I (2.723) BS01 dna ? N/A Q9UJQ4 36257403
    17 7y3m:I (2.723) BS02 dna ? N/A Q9UJQ4 36257403
    18 7y3m:I (2.723) BS03 ZN ? N/A Q9UJQ4 36257403
    19 7y3m:I (2.723) BS04 ZN ? N/A Q9UJQ4 36257403
    20 7y3m:J (2.723) BS01 dna ? N/A Q9UJQ4 36257403
    21 7y3m:J (2.723) BS02 dna ? N/A Q9UJQ4 36257403
    22 7y3m:J (2.723) BS03 ZN ? N/A Q9UJQ4 36257403
    23 7y3m:J (2.723) BS04 ZN ? N/A Q9UJQ4 36257403
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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