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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7wtn:CA (3.4) BS01 rna ? GO:0000056 ... Q99216 36321656
    2 7wtn:CB (3.4) BS01 rna 2.1.1.309 GO:0000056 ... P25627 36321656
    3 7wtn:SB (3.4) BS01 rna ? GO:0000462 ... P33442 36321656
    4 7wtn:SC (3.4) BS01 rna ? GO:0000054 ... P25443 36321656
    5 7wtn:SE (3.4) BS01 rna ? GO:0002181 ... P0CX35 36321656
    6 7wtn:SG (3.4) BS01 rna ? GO:0000462 ... P0CX37 36321656
    7 7wtn:SH (3.4) BS01 rna ? GO:0002181 ... P26786 36321656
    8 7wtn:SI (3.4) BS01 rna ? GO:0000462 ... P0CX39 36321656
    9 7wtn:SJ (3.4) BS01 rna ? GO:0000462 ... O13516 36321656
    10 7wtn:SL (3.4) BS01 rna ? GO:0000028 ... P0CX47 36321656
    11 7wtn:SN (3.4) BS01 rna ? GO:0000462 ... P05756 36321656
    12 7wtn:SO (3.4) BS01 rna ? GO:0000028 ... P06367 36321656
    13 7wtn:SW (3.4) BS01 rna ? GO:0002181 ... P0C0W1 36321656
    14 7wtn:SX (3.4) BS01 rna ? GO:0000462 ... P0CX29 36321656
    15 7wtn:SY (3.4) BS01 rna ? GO:0000462 ... P0CX31 36321656
    16 7wtn:Sb (3.4) BS01 rna ? GO:0000028 ... P35997 36321656
    17 7wtn:Sb (3.4) BS02 ZN ? GO:0000028 ... P35997 36321656
    18 7wtn:Se (3.4) BS01 rna ? GO:0002181 ... P0CX33 36321656
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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