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BioLiP
Download all results in tab-seperated text for 53 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7w5b:1 (4.3) BS01 rna ? GO:0000375 ... O95391 35705093
    2 7w5b:1 (4.3) BS02 ZN ? GO:0000375 ... O95391 35705093
    3 7w5b:2 (4.3) BS01 rna ? GO:0003014 ... Q9H875 35705093
    4 7w5b:2 (4.3) BS02 rna ? GO:0003014 ... Q9H875 35705093
    5 7w5b:A (4.3) BS01 rna ? GO:0000244 ... Q6P2Q9 35705093
    6 7w5b:A (4.3) BS02 rna ? GO:0000244 ... Q6P2Q9 35705093
    7 7w5b:A (4.3) BS03 rna ? GO:0000244 ... Q6P2Q9 35705093
    8 7w5b:A (4.3) BS04 rna ? GO:0000244 ... Q6P2Q9 35705093
    9 7w5b:A (4.3) BS05 rna ? GO:0000244 ... Q6P2Q9 35705093
    10 7w5b:A (4.3) BS06 IHP ? GO:0000244 ... Q6P2Q9 35705093
    11 7w5b:C (4.3) BS01 rna ? GO:0000398 ... Q15029 35705093
    12 7w5b:C (4.3) BS02 GTP ? GO:0000398 ... Q15029 35705093
    13 7w5b:J (4.3) BS01 rna ? GO:0000245 ... Q9BZJ0 35705093
    14 7w5b:L (4.3) BS01 rna ? GO:0000077 ... Q99459 35705093
    15 7w5b:L (4.3) BS02 rna ? GO:0000077 ... Q99459 35705093
    16 7w5b:M (4.3) BS01 rna ? GO:0000398 ... O95926 35705093
    17 7w5b:M (4.3) BS02 rna ? GO:0000398 ... O95926 35705093
    18 7w5b:N (4.3) BS01 rna ? GO:0000398 ... P41223 35705093
    19 7w5b:N (4.3) BS02 ZN ? GO:0000398 ... P41223 35705093
    20 7w5b:N (4.3) BS03 ZN ? GO:0000398 ... P41223 35705093
    21 7w5b:N (4.3) BS04 ZN ? GO:0000398 ... P41223 35705093
    22 7w5b:O (4.3) BS01 rna ? GO:0000398 ... Q9NW64 35705093
    23 7w5b:O (4.3) BS02 rna ? GO:0000398 ... Q9NW64 35705093
    24 7w5b:O (4.3) BS03 ZN ? GO:0000398 ... Q9NW64 35705093
    25 7w5b:O (4.3) BS04 ZN ? GO:0000398 ... Q9NW64 35705093
    26 7w5b:O (4.3) BS05 ZN ? GO:0000398 ... Q9NW64 35705093
    27 7w5b:P (4.3) BS01 rna ? GO:0000398 ... Q9P013 35705093
    28 7w5b:P (4.3) BS02 rna ? GO:0000398 ... Q9P013 35705093
    29 7w5b:P (4.3) BS03 rna ? GO:0000398 ... Q9P013 35705093
    30 7w5b:Q (4.3) BS01 ATP 3.6.4.13 GO:0000398 ... O60306 35705093
    31 7w5b:R (4.3) BS01 rna ? GO:0000122 ... Q13573 35705093
    32 7w5b:R (4.3) BS02 rna ? GO:0000122 ... Q13573 35705093
    33 7w5b:U (4.3) BS01 rna ? GO:0000398 ... Q9UQ35 35705093
    34 7w5b:W (4.3) BS01 rna ? GO:0000398 ... O60508 35705093
    35 7w5b:W (4.3) BS02 rna ? GO:0000398 ... O60508 35705093
    36 7w5b:W (4.3) BS03 rna ? GO:0000398 ... O60508 35705093
    37 7w5b:a (4.3) BS01 rna ? GO:0000243 ... P62318 35705093
    38 7w5b:b (4.3) BS01 rna ? GO:0000387 ... P14678 35705093
    39 7w5b:c (4.3) BS01 rna ? GO:0000243 ... P62314 35705093
    40 7w5b:d (4.3) BS01 rna ? GO:0000245 ... P62316 35705093
    41 7w5b:e (4.3) BS01 rna ? GO:0000245 ... P62304 35705093
    42 7w5b:f (4.3) BS01 rna ? GO:0000387 ... P62306 35705093
    43 7w5b:g (4.3) BS01 rna ? GO:0000245 ... P62308 35705093
    44 7w5b:h (4.3) BS01 rna ? GO:0000243 ... P62318 35705093
    45 7w5b:i (4.3) BS01 rna ? GO:0000387 ... P14678 35705093
    46 7w5b:j (4.3) BS01 rna ? GO:0000243 ... P62314 35705093
    47 7w5b:k (4.3) BS01 rna ? GO:0000245 ... P62316 35705093
    48 7w5b:l (4.3) BS01 rna ? GO:0000245 ... P62304 35705093
    49 7w5b:m (4.3) BS01 rna ? GO:0000387 ... P62306 35705093
    50 7w5b:n (4.3) BS01 rna ? GO:0000245 ... P62308 35705093
    51 7w5b:p (4.3) BS01 rna ? GO:0000398 ... P08579 35705093
    52 7w5b:y (4.3) BS01 rna 5.2.1.8 GO:0000398 ... Q9UNP9 35705093
    53 7w5b:z (4.3) BS01 rna ? GO:0003723 ... Q9Y421 35705093
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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