Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7vvr:A (1.65) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 37742916
    2 7vvr:A (1.65) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 37742916
    3 7vvr:A (1.65) BS03 CU 7.1.1.9 GO:0004129 ... P00396 37742916
    4 7vvr:A (1.65) BS04 MG 7.1.1.9 GO:0004129 ... P00396 37742916
    5 7vvr:A (1.65) BS05 CYN 7.1.1.9 GO:0004129 ... P00396 37742916
    6 7vvr:B (1.65) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 37742916
    7 7vvr:B (1.65) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 37742916
    8 7vvr:C (1.65) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 37742916
    9 7vvr:C (1.65) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 37742916
    10 7vvr:C (1.65) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 37742916
    11 7vvr:F (1.65) BS01 ZN ? GO:0005740 ... P00428 37742916
    12 7vvr:G (1.65) BS01 DMU ? GO:0005743 ... P07471 37742916
    13 7vvr:J (1.65) BS01 DMU ? GO:0006123 ... P07470 37742916
    14 7vvr:J (1.65) BS02 DMU ? GO:0006123 ... P07470 37742916
    15 7vvr:K (1.65) BS01 DMU ? GO:0006123 ... P13183 37742916
    16 7vvr:L (1.65) BS01 DMU ? GO:0006123 ... P00430 37742916
    17 7vvr:M (1.65) BS01 DMU ? GO:0006123 ... P10175 37742916
    18 7vvr:N (1.65) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 37742916
    19 7vvr:N (1.65) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 37742916
    20 7vvr:N (1.65) BS03 CU 7.1.1.9 GO:0004129 ... P00396 37742916
    21 7vvr:N (1.65) BS04 MG 7.1.1.9 GO:0004129 ... P00396 37742916
    22 7vvr:N (1.65) BS05 CYN 7.1.1.9 GO:0004129 ... P00396 37742916
    23 7vvr:O (1.65) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 37742916
    24 7vvr:O (1.65) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 37742916
    25 7vvr:O (1.65) BS03 DMU 7.1.1.9 GO:0004129 ... P68530 37742916
    26 7vvr:P (1.65) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 37742916
    27 7vvr:P (1.65) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 37742916
    28 7vvr:S (1.65) BS01 ZN ? GO:0005740 ... P00428 37742916
    29 7vvr:W (1.65) BS01 DMU ? GO:0006123 ... P07470 37742916
    30 7vvr:Z (1.65) BS01 DMU ? GO:0006123 ... P10175 37742916
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218