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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7v9s:A (11.0) BS01 dna ? GO:0000786 ... P68431 36104563
    2 7v9s:A (11.0) BS02 dna ? GO:0000786 ... P68431 36104563
    3 7v9s:B (11.0) BS01 dna ? GO:0000781 ... P62805 36104563
    4 7v9s:B (11.0) BS02 dna ? GO:0000781 ... P62805 36104563
    5 7v9s:C (11.0) BS01 dna ? GO:0000786 ... P04908 36104563
    6 7v9s:C (11.0) BS02 dna ? GO:0000786 ... P04908 36104563
    7 7v9s:D (11.0) BS01 dna ? GO:0000786 ... O60814 36104563
    8 7v9s:D (11.0) BS02 dna ? GO:0000786 ... O60814 36104563
    9 7v9s:E (11.0) BS01 dna ? GO:0000786 ... P68431 36104563
    10 7v9s:E (11.0) BS02 dna ? GO:0000786 ... P68431 36104563
    11 7v9s:F (11.0) BS01 dna ? GO:0000781 ... P62805 36104563
    12 7v9s:F (11.0) BS02 dna ? GO:0000781 ... P62805 36104563
    13 7v9s:G (11.0) BS01 dna ? GO:0000786 ... P04908 36104563
    14 7v9s:G (11.0) BS02 dna ? GO:0000786 ... P04908 36104563
    15 7v9s:H (11.0) BS01 dna ? GO:0000786 ... O60814 36104563
    16 7v9s:H (11.0) BS02 dna ? GO:0000786 ... O60814 36104563
    17 7v9s:K (11.0) BS01 dna ? GO:0000786 ... P68431 36104563
    18 7v9s:K (11.0) BS02 dna ? GO:0000786 ... P68431 36104563
    19 7v9s:L (11.0) BS01 dna ? GO:0000781 ... P62805 36104563
    20 7v9s:L (11.0) BS02 dna ? GO:0000781 ... P62805 36104563
    21 7v9s:M (11.0) BS01 dna ? GO:0000786 ... P04908 36104563
    22 7v9s:M (11.0) BS02 dna ? GO:0000786 ... P04908 36104563
    23 7v9s:N (11.0) BS01 dna ? GO:0000786 ... O60814 36104563
    24 7v9s:N (11.0) BS02 dna ? GO:0000786 ... O60814 36104563
    25 7v9s:O (11.0) BS01 dna ? GO:0000786 ... P68431 36104563
    26 7v9s:O (11.0) BS02 dna ? GO:0000786 ... P68431 36104563
    27 7v9s:P (11.0) BS01 dna ? GO:0000781 ... P62805 36104563
    28 7v9s:P (11.0) BS02 dna ? GO:0000781 ... P62805 36104563
    29 7v9s:Q (11.0) BS01 dna ? GO:0000786 ... P04908 36104563
    30 7v9s:Q (11.0) BS02 dna ? GO:0000786 ... P04908 36104563
    31 7v9s:R (11.0) BS01 dna ? GO:0000786 ... O60814 36104563
    32 7v9s:R (11.0) BS02 dna ? GO:0000786 ... O60814 36104563
    33 7v9s:S (11.0) BS01 dna ? GO:0000786 ... P68431 36104563
    34 7v9s:S (11.0) BS02 dna ? GO:0000786 ... P68431 36104563
    35 7v9s:T (11.0) BS01 dna ? GO:0000781 ... P62805 36104563
    36 7v9s:T (11.0) BS02 dna ? GO:0000781 ... P62805 36104563
    37 7v9s:U (11.0) BS01 dna ? GO:0000786 ... P04908 36104563
    38 7v9s:U (11.0) BS02 dna ? GO:0000786 ... P04908 36104563
    39 7v9s:V (11.0) BS01 dna ? GO:0000786 ... O60814 36104563
    40 7v9s:V (11.0) BS02 dna ? GO:0000786 ... O60814 36104563
    41 7v9s:W (11.0) BS01 dna ? GO:0000786 ... P68431 36104563
    42 7v9s:W (11.0) BS02 dna ? GO:0000786 ... P68431 36104563
    43 7v9s:X (11.0) BS01 dna ? GO:0000781 ... P62805 36104563
    44 7v9s:X (11.0) BS02 dna ? GO:0000781 ... P62805 36104563
    45 7v9s:Y (11.0) BS01 dna ? GO:0000786 ... P04908 36104563
    46 7v9s:Y (11.0) BS02 dna ? GO:0000786 ... P04908 36104563
    47 7v9s:Z (11.0) BS01 dna ? GO:0000786 ... O60814 36104563
    48 7v9s:Z (11.0) BS02 dna ? GO:0000786 ... O60814 36104563
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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