Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 32 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7v31:A (2.9) BS01 SF4 7.1.1.2 GO:0005739 ... A0A4X1SZP7 35145322
    2 7v31:A (2.9) BS02 FMN 7.1.1.2 GO:0005739 ... A0A4X1SZP7 35145322
    3 7v31:B (2.9) BS01 SF4 ? GO:0016020 ... A0A287BDC0 35145322
    4 7v31:B (2.9) BS02 SF4 ? GO:0016020 ... A0A287BDC0 35145322
    5 7v31:C (2.9) BS01 SF4 ? GO:0008137 ... A0A8D1TL60 35145322
    6 7v31:C (2.9) BS02 PLX ? GO:0008137 ... A0A8D1TL60 35145322
    7 7v31:C (2.9) BS03 970 ? GO:0008137 ... A0A8D1TL60 35145322
    8 7v31:C (2.9) BS04 UQ ? GO:0008137 ... A0A8D1TL60 35145322
    9 7v31:E (2.9) BS01 8Q1 ? GO:0045271 ... F1SJP6 35145322
    10 7v31:J (2.9) BS01 NDP ? N/A A0A287AE88 35145322
    11 7v31:J (2.9) BS02 UQ ? N/A A0A287AE88 35145322
    12 7v31:J (2.9) BS03 PLX ? N/A A0A287AE88 35145322
    13 7v31:M (2.9) BS01 SF4 ? GO:0005743 ... A0A4X1V1H9 35145322
    14 7v31:M (2.9) BS02 SF4 ? GO:0005743 ... A0A4X1V1H9 35145322
    15 7v31:M (2.9) BS03 FES ? GO:0005743 ... A0A4X1V1H9 35145322
    16 7v31:M (2.9) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    17 7v31:O (2.9) BS01 FES 7.1.1.2 GO:0016491 ... A0A287BG40 35145322
    18 7v31:Q (2.9) BS01 SF4 ? GO:0003954 ... F1S1A8 35145322
    19 7v31:Q (2.9) BS02 970 ? GO:0003954 ... F1S1A8 35145322
    20 7v31:T (2.9) BS01 ZN ? GO:0006120 ... F1S031 35145322
    21 7v31:a (2.9) BS01 PLX ? N/A F1SGC6 35145322
    22 7v31:e (2.9) BS01 PLX ? N/A A0A287BMW6 35145322
    23 7v31:g (2.9) BS01 PLX ? GO:0005737 ... A0A480JRW3 35145322
    24 7v31:i (2.9) BS01 PLX 7.1.1.2 GO:0005739 ... O79875 35145322
    25 7v31:j (2.9) BS01 PLX 7.1.1.2 GO:0005739 ... O79880 35145322
    26 7v31:j (2.9) BS02 PLX 7.1.1.2 GO:0005739 ... O79880 35145322
    27 7v31:n (2.9) BS01 PLX ? GO:0005739 ... A0A8D2CGH8 35145322
    28 7v31:p (2.9) BS01 8Q1 ? GO:0006120 ... K7GSE5 35145322
    29 7v31:r (2.9) BS01 PLX 7.1.1.2 GO:0003954 ... O79881 35145322
    30 7v31:r (2.9) BS02 PLX 7.1.1.2 GO:0003954 ... O79881 35145322
    31 7v31:s (2.9) BS01 UQ 7.1.1.2 GO:0003954 ... O79874 35145322
    32 7v31:w (2.9) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218