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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 267 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7u2i:10 (2.55) BS01 rna ? GO:0003735 ... P60493 35766409
    2 7u2i:10 (2.55) BS02 rna ? GO:0003735 ... P60493 35766409
    3 7u2i:10 (2.55) BS03 rna ? GO:0003735 ... P60493 35766409
    4 7u2i:10 (2.55) BS04 MG ? GO:0003735 ... P60493 35766409
    5 7u2i:10 (2.55) BS05 MG ? GO:0003735 ... P60493 35766409
    6 7u2i:10 (2.55) BS06 MG ? GO:0003735 ... P60493 35766409
    7 7u2i:10 (2.55) BS07 MG ? GO:0003735 ... P60493 35766409
    8 7u2i:11 (2.55) BS01 rna ? GO:0003735 ... P60494 35766409
    9 7u2i:11 (2.55) BS02 rna ? GO:0003735 ... P60494 35766409
    10 7u2i:11 (2.55) BS03 MG ? GO:0003735 ... P60494 35766409
    11 7u2i:12 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 35766409
    12 7u2i:12 (2.55) BS02 MG ? GO:0003735 ... Q5SHP6 35766409
    13 7u2i:13 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 35766409
    14 7u2i:13 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 35766409
    15 7u2i:13 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 35766409
    16 7u2i:13 (2.55) BS04 MG ? GO:0003735 ... Q5SHQ6 35766409
    17 7u2i:13 (2.55) BS05 MG ? GO:0003735 ... Q5SHQ6 35766409
    18 7u2i:14 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 35766409
    19 7u2i:14 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 35766409
    20 7u2i:14 (2.55) BS03 MG ? GO:0003735 ... Q5SJE1 35766409
    21 7u2i:15 (2.55) BS01 rna ? GO:0003735 ... P80339 35766409
    22 7u2i:15 (2.55) BS02 MG ? GO:0003735 ... P80339 35766409
    23 7u2i:15 (2.55) BS03 ZN ? GO:0003735 ... P80339 35766409
    24 7u2i:16 (2.55) BS01 rna ? GO:0000049 ... P35871 35766409
    25 7u2i:16 (2.55) BS02 MG ? GO:0000049 ... P35871 35766409
    26 7u2i:16 (2.55) BS03 MG ? GO:0000049 ... P35871 35766409
    27 7u2i:16 (2.55) BS04 MG ? GO:0000049 ... P35871 35766409
    28 7u2i:16 (2.55) BS05 ZN ? GO:0000049 ... P35871 35766409
    29 7u2i:17 (2.55) BS01 rna ? GO:0003735 ... P80340 35766409
    30 7u2i:17 (2.55) BS02 MG ? GO:0003735 ... P80340 35766409
    31 7u2i:17 (2.55) BS03 MG ? GO:0003735 ... P80340 35766409
    32 7u2i:18 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 35766409
    33 7u2i:18 (2.55) BS02 MG ? GO:0003735 ... Q5SKU1 35766409
    34 7u2i:18 (2.55) BS03 MG ? GO:0003735 ... Q5SKU1 35766409
    35 7u2i:18 (2.55) BS04 MG ? GO:0003735 ... Q5SKU1 35766409
    36 7u2i:19 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 35766409
    37 7u2i:19 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 35766409
    38 7u2i:1D (2.55) BS01 rna ? GO:0002181 ... P60405 35766409
    39 7u2i:1D (2.55) BS02 rna ? GO:0002181 ... P60405 35766409
    40 7u2i:1D (2.55) BS03 MG ? GO:0002181 ... P60405 35766409
    41 7u2i:1D (2.55) BS04 MG ? GO:0002181 ... P60405 35766409
    42 7u2i:1D (2.55) BS05 MG ? GO:0002181 ... P60405 35766409
    43 7u2i:1D (2.55) BS06 MG ? GO:0002181 ... P60405 35766409
    44 7u2i:1D (2.55) BS07 MG ? GO:0002181 ... P60405 35766409
    45 7u2i:1D (2.55) BS08 MG ? GO:0002181 ... P60405 35766409
    46 7u2i:1D (2.55) BS09 MG ? GO:0002181 ... P60405 35766409
    47 7u2i:1D (2.55) BS10 MG ? GO:0002181 ... P60405 35766409
    48 7u2i:1D (2.55) BS11 MG ? GO:0002181 ... P60405 35766409
    49 7u2i:1E (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 35766409
    50 7u2i:1E (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 35766409
    51 7u2i:1E (2.55) BS03 MG ? GO:0003735 ... Q5SHN8 35766409
    52 7u2i:1E (2.55) BS04 MG ? GO:0003735 ... Q5SHN8 35766409
    53 7u2i:1E (2.55) BS05 MG ? GO:0003735 ... Q5SHN8 35766409
    54 7u2i:1F (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 35766409
    55 7u2i:1F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 35766409
    56 7u2i:1F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 35766409
    57 7u2i:1F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 35766409
    58 7u2i:1F (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 35766409
    59 7u2i:1F (2.55) BS06 MG ? GO:0003735 ... Q5SHN9 35766409
    60 7u2i:1F (2.55) BS07 MG ? GO:0003735 ... Q5SHN9 35766409
    61 7u2i:1F (2.55) BS08 MG ? GO:0003735 ... Q5SHN9 35766409
    62 7u2i:1F (2.55) BS09 MG ? GO:0003735 ... Q5SHN9 35766409
    63 7u2i:1G (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 35766409
    64 7u2i:1G (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 35766409
    65 7u2i:1G (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 35766409
    66 7u2i:1G (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 35766409
    67 7u2i:1H (2.55) BS01 rna ? GO:0002181 ... P0DOY8 35766409
    68 7u2i:1I (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 35766409
    69 7u2i:1N (2.55) BS01 rna ? GO:0003729 ... P60488 35766409
    70 7u2i:1N (2.55) BS02 MG ? GO:0003729 ... P60488 35766409
    71 7u2i:1N (2.55) BS03 MG ? GO:0003729 ... P60488 35766409
    72 7u2i:1N (2.55) BS04 MG ? GO:0003729 ... P60488 35766409
    73 7u2i:1O (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 35766409
    74 7u2i:1O (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 35766409
    75 7u2i:1O (2.55) BS03 MG ? GO:0003735 ... Q5SHP8 35766409
    76 7u2i:1P (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 35766409
    77 7u2i:1P (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 35766409
    78 7u2i:1P (2.55) BS03 MG ? GO:0003735 ... Q5SHQ7 35766409
    79 7u2i:1P (2.55) BS04 MG ? GO:0003735 ... Q5SHQ7 35766409
    80 7u2i:1P (2.55) BS05 MG ? GO:0003735 ... Q5SHQ7 35766409
    81 7u2i:1Q (2.55) BS01 rna ? GO:0000049 ... P60489 35766409
    82 7u2i:1Q (2.55) BS02 rna ? GO:0000049 ... P60489 35766409
    83 7u2i:1Q (2.55) BS03 rna ? GO:0000049 ... P60489 35766409
    84 7u2i:1Q (2.55) BS04 rna ? GO:0000049 ... P60489 35766409
    85 7u2i:1Q (2.55) BS05 MG ? GO:0000049 ... P60489 35766409
    86 7u2i:1Q (2.55) BS06 MG ? GO:0000049 ... P60489 35766409
    87 7u2i:1Q (2.55) BS07 MG ? GO:0000049 ... P60489 35766409
    88 7u2i:1Q (2.55) BS08 MG ? GO:0000049 ... P60489 35766409
    89 7u2i:1Q (2.55) BS09 MG ? GO:0000049 ... P60489 35766409
    90 7u2i:1R (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 35766409
    91 7u2i:1R (2.55) BS02 MG ? GO:0003735 ... Q9Z9H5 35766409
    92 7u2i:1S (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 35766409
    93 7u2i:1S (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 35766409
    94 7u2i:1S (2.55) BS03 MG ? GO:0003735 ... Q5SHQ4 35766409
    95 7u2i:1S (2.55) BS04 MG ? GO:0003735 ... Q5SHQ4 35766409
    96 7u2i:1T (2.55) BS01 rna ? GO:0003735 ... P60490 35766409
    97 7u2i:1T (2.55) BS02 rna ? GO:0003735 ... P60490 35766409
    98 7u2i:1T (2.55) BS03 MG ? GO:0003735 ... P60490 35766409
    99 7u2i:1U (2.55) BS01 rna ? GO:0000027 ... P60491 35766409
    100 7u2i:1U (2.55) BS02 MG ? GO:0000027 ... P60491 35766409
    101 7u2i:1U (2.55) BS03 MG ? GO:0000027 ... P60491 35766409
    102 7u2i:1U (2.55) BS04 MG ? GO:0000027 ... P60491 35766409
    103 7u2i:1U (2.55) BS05 MG ? GO:0000027 ... P60491 35766409
    104 7u2i:1U (2.55) BS06 MG ? GO:0000027 ... P60491 35766409
    105 7u2i:1U (2.55) BS07 MG ? GO:0000027 ... P60491 35766409
    106 7u2i:1V (2.55) BS01 rna ? GO:0003723 ... P60492 35766409
    107 7u2i:1V (2.55) BS02 MG ? GO:0003723 ... P60492 35766409
    108 7u2i:1V (2.55) BS03 MG ? GO:0003723 ... P60492 35766409
    109 7u2i:1V (2.55) BS04 MG ? GO:0003723 ... P60492 35766409
    110 7u2i:1V (2.55) BS05 MG ? GO:0003723 ... P60492 35766409
    111 7u2i:1V (2.55) BS06 MG ? GO:0003723 ... P60492 35766409
    112 7u2i:1V (2.55) BS07 MG ? GO:0003723 ... P60492 35766409
    113 7u2i:1W (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 35766409
    114 7u2i:1W (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 35766409
    115 7u2i:1W (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 35766409
    116 7u2i:1W (2.55) BS04 MG ? GO:0003735 ... Q5SHP3 35766409
    117 7u2i:1W (2.55) BS05 MG ? GO:0003735 ... Q5SHP3 35766409
    118 7u2i:1X (2.55) BS01 rna ? GO:0000027 ... Q5SHP0 35766409
    119 7u2i:1X (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 35766409
    120 7u2i:1X (2.55) BS03 MG ? GO:0000027 ... Q5SHP0 35766409
    121 7u2i:1X (2.55) BS04 MG ? GO:0000027 ... Q5SHP0 35766409
    122 7u2i:1X (2.55) BS05 MG ? GO:0000027 ... Q5SHP0 35766409
    123 7u2i:1X (2.55) BS06 MG ? GO:0000027 ... Q5SHP0 35766409
    124 7u2i:1Y (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 35766409
    125 7u2i:1Y (2.55) BS02 MG ? GO:0003723 ... Q5SHP9 35766409
    126 7u2i:1Y (2.55) BS03 ZN ? GO:0003723 ... Q5SHP9 35766409
    127 7u2i:1Z (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 35766409
    128 7u2i:1Z (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 35766409
    129 7u2i:1b (2.55) BS01 rna ? GO:0003735 ... P80371 35766409
    130 7u2i:1c (2.55) BS01 rna ? GO:0003676 ... P80372 35766409
    131 7u2i:1d (2.55) BS01 rna ? GO:0003723 ... P80373 35766409
    132 7u2i:1d (2.55) BS02 SF4 ? GO:0003723 ... P80373 35766409
    133 7u2i:1e (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 35766409
    134 7u2i:1e (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 35766409
    135 7u2i:1e (2.55) BS03 MG ? GO:0003723 ... Q5SHQ5 35766409
    136 7u2i:1f (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 35766409
    137 7u2i:1f (2.55) BS02 MG ? GO:0003735 ... Q5SLP8 35766409
    138 7u2i:1g (2.55) BS01 rna ? GO:0000028 ... P17291 35766409
    139 7u2i:1g (2.55) BS02 rna ? GO:0000028 ... P17291 35766409
    140 7u2i:1h (2.55) BS01 rna ? GO:0003735 ... P0DOY9 35766409
    141 7u2i:1h (2.55) BS02 MG ? GO:0003735 ... P0DOY9 35766409
    142 7u2i:1i (2.55) BS01 rna ? GO:0000049 ... P80374 35766409
    143 7u2i:1i (2.55) BS02 rna ? GO:0000049 ... P80374 35766409
    144 7u2i:1j (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 35766409
    145 7u2i:1k (2.55) BS01 rna ? GO:0003735 ... P80376 35766409
    146 7u2i:1k (2.55) BS02 MG ? GO:0003735 ... P80376 35766409
    147 7u2i:1l (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 35766409
    148 7u2i:1l (2.55) BS02 rna ? GO:0000049 ... Q5SHN3 35766409
    149 7u2i:1l (2.55) BS03 MG ? GO:0000049 ... Q5SHN3 35766409
    150 7u2i:1m (2.55) BS01 rna ? GO:0000049 ... P80377 35766409
    151 7u2i:1m (2.55) BS02 rna ? GO:0000049 ... P80377 35766409
    152 7u2i:1m (2.55) BS03 rna ? GO:0000049 ... P80377 35766409
    153 7u2i:1m (2.55) BS04 MG ? GO:0000049 ... P80377 35766409
    154 7u2i:1n (2.55) BS01 rna ? GO:0003735 ... P0DOY6 35766409
    155 7u2i:1n (2.55) BS02 MG ? GO:0003735 ... P0DOY6 35766409
    156 7u2i:1n (2.55) BS03 ZN ? GO:0003735 ... P0DOY6 35766409
    157 7u2i:1o (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 35766409
    158 7u2i:1o (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 35766409
    159 7u2i:1p (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 35766409
    160 7u2i:1q (2.55) BS01 rna ? GO:0003735 ... P0DOY7 35766409
    161 7u2i:1r (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 35766409
    162 7u2i:1s (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 35766409
    163 7u2i:1t (2.55) BS01 rna ? GO:0003723 ... P80380 35766409
    164 7u2i:1t (2.55) BS02 MG ? GO:0003723 ... P80380 35766409
    165 7u2i:20 (2.55) BS01 rna ? GO:0003735 ... P60493 35766409
    166 7u2i:20 (2.55) BS02 rna ? GO:0003735 ... P60493 35766409
    167 7u2i:21 (2.55) BS01 rna ? GO:0003735 ... P60494 35766409
    168 7u2i:21 (2.55) BS02 rna ? GO:0003735 ... P60494 35766409
    169 7u2i:21 (2.55) BS03 MG ? GO:0003735 ... P60494 35766409
    170 7u2i:22 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 35766409
    171 7u2i:23 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 35766409
    172 7u2i:23 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 35766409
    173 7u2i:23 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 35766409
    174 7u2i:24 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 35766409
    175 7u2i:24 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 35766409
    176 7u2i:25 (2.55) BS01 rna ? GO:0003735 ... P80339 35766409
    177 7u2i:25 (2.55) BS02 MG ? GO:0003735 ... P80339 35766409
    178 7u2i:25 (2.55) BS03 ZN ? GO:0003735 ... P80339 35766409
    179 7u2i:26 (2.55) BS01 rna ? GO:0000049 ... P35871 35766409
    180 7u2i:26 (2.55) BS02 ZN ? GO:0000049 ... P35871 35766409
    181 7u2i:27 (2.55) BS01 rna ? GO:0003735 ... P80340 35766409
    182 7u2i:27 (2.55) BS02 MG ? GO:0003735 ... P80340 35766409
    183 7u2i:28 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 35766409
    184 7u2i:29 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 35766409
    185 7u2i:29 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 35766409
    186 7u2i:2D (2.55) BS01 rna ? GO:0002181 ... P60405 35766409
    187 7u2i:2D (2.55) BS02 MG ? GO:0002181 ... P60405 35766409
    188 7u2i:2D (2.55) BS03 MG ? GO:0002181 ... P60405 35766409
    189 7u2i:2D (2.55) BS04 MG ? GO:0002181 ... P60405 35766409
    190 7u2i:2D (2.55) BS05 MG ? GO:0002181 ... P60405 35766409
    191 7u2i:2E (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 35766409
    192 7u2i:2E (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 35766409
    193 7u2i:2F (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 35766409
    194 7u2i:2F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 35766409
    195 7u2i:2F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 35766409
    196 7u2i:2F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 35766409
    197 7u2i:2G (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 35766409
    198 7u2i:2G (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 35766409
    199 7u2i:2G (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 35766409
    200 7u2i:2H (2.55) BS01 rna ? GO:0002181 ... P0DOY8 35766409
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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