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BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ttw:A (2.9) BS01 rna ? GO:0003735 ... Q2FZ42 35736238
    2 7ttw:B (2.9) BS01 rna ? GO:0002181 ... P60430 35736238
    3 7ttw:C (2.9) BS01 rna ? GO:0000027 ... Q2FXQ1 35736238
    4 7ttw:D (2.9) BS01 rna ? GO:0003723 ... Q2FXS8 35736238
    5 7ttw:E (2.9) BS01 rna ? GO:0003735 ... Q2FW11 35736238
    6 7ttw:F (2.9) BS01 rna ? GO:0000027 ... Q2FW08 35736238
    7 7ttw:G (2.9) BS01 rna ? GO:0003723 ... Q2FW17 35736238
    8 7ttw:H (2.9) BS01 rna ? GO:0003723 ... Q2FJE0 35736238
    9 7ttw:I (2.9) BS01 rna ? GO:0003735 ... Q2FXT0 35736238
    10 7ttw:J (2.9) BS01 rna ? GO:0003735 ... Q2FZ60 35736238
    11 7ttw:K (2.9) BS01 rna ? GO:0003735 ... Q2FW14 35736238
    12 7ttw:L (2.9) BS01 rna ? GO:0003735 ... Q2FW06 35736238
    13 7ttw:M (2.9) BS01 rna ? GO:0003735 ... P0A0G2 35736238
    14 7ttw:N (2.9) BS01 rna ? GO:0003735 ... Q2FZF1 35736238
    15 7ttw:O (2.9) BS01 rna ? GO:0003735 ... Q2FY22 35736238
    16 7ttw:P (2.9) BS01 rna ? GO:0003735 ... Q2FUQ0 35736238
    17 7ttw:Q (2.9) BS01 rna ? GO:0003735 ... Q2FXQ0 35736238
    18 7ttw:R (2.9) BS01 rna ? GO:0003735 ... Q2FW29 35736238
    19 7ttw:S (2.9) BS01 rna ? GO:0003735 ... Q2FW07 35736238
    20 7ttw:V (2.9) BS01 rna ? GO:0003729 ... Q2FW38 35736238
    21 7ttw:W (2.9) BS01 rna ? GO:0003735 ... Q2FW16 35736238
    22 7ttw:X (2.9) BS01 rna ? GO:0003735 ... P0A0F8 35736238
    23 7ttw:Y (2.9) BS01 rna ? GO:0000049 ... Q2FW13 35736238
    24 7ttw:Z (2.9) BS01 rna ? GO:0003735 ... Q2FW33 35736238
    25 7ttw:a (2.9) BS01 rna ? GO:0003735 ... Q2FW22 35736238
    26 7ttw:a (2.9) BS02 rna ? GO:0003735 ... Q2FW22 35736238
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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