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BioLiP
Download all results in tab-seperated text for 101 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7toq:AL02 (3.1) BS01 rna N/A GO:0003735 ... N/A 35589706
    2 7toq:AL02 (3.1) BS02 rna N/A GO:0003735 ... N/A 35589706
    3 7toq:AL03 (3.1) BS01 rna ? GO:0003723 ... G1TL06 35589706
    4 7toq:AL04 (3.1) BS01 rna ? GO:0003723 ... A0A5F9DCT1 35589706
    5 7toq:AL04 (3.1) BS02 rna ? GO:0003723 ... A0A5F9DCT1 35589706
    6 7toq:AL05 (3.1) BS01 rna ? GO:0000027 ... P19949 35589706
    7 7toq:AL05 (3.1) BS02 rna ? GO:0000027 ... P19949 35589706
    8 7toq:AL06 (3.1) BS01 rna ? GO:0003735 ... G1SKF7 35589706
    9 7toq:AL07 (3.1) BS01 rna N/A GO:0000463 ... N/A 35589706
    10 7toq:AL07 (3.1) BS02 rna N/A GO:0000463 ... N/A 35589706
    11 7toq:AL08 (3.1) BS01 rna N/A GO:0042254 ... N/A 35589706
    12 7toq:AL08 (3.1) BS02 rna N/A GO:0042254 ... N/A 35589706
    13 7toq:AL09 (3.1) BS01 rna ? GO:0002181 ... G1SWI6 35589706
    14 7toq:AL10 (3.1) BS01 rna ? GO:0000027 ... B7NZQ2 35589706
    15 7toq:AL10 (3.1) BS02 rna ? GO:0000027 ... B7NZQ2 35589706
    16 7toq:AL11 (3.1) BS01 rna ? GO:0003723 ... G1TUB8 35589706
    17 7toq:AL11 (3.1) BS02 rna ? GO:0003723 ... G1TUB8 35589706
    18 7toq:AL12 (3.1) BS01 rna ? GO:0003723 ... G1SMR7 35589706
    19 7toq:AL13 (3.1) BS01 rna ? GO:0003723 ... G1TKB3 35589706
    20 7toq:AL13 (3.1) BS02 rna ? GO:0003723 ... G1TKB3 35589706
    21 7toq:AL14 (3.1) BS01 rna ? GO:0003723 ... G1SZ12 35589706
    22 7toq:AL15 (3.1) BS01 rna ? GO:0002181 ... G1T0C1 35589706
    23 7toq:AL15 (3.1) BS02 rna ? GO:0002181 ... G1T0C1 35589706
    24 7toq:AL16 (3.1) BS01 rna N/A GO:0003735 ... N/A 35589706
    25 7toq:AL17 (3.1) BS01 rna ? GO:0003735 ... G1SCJ6 35589706
    26 7toq:AL17 (3.1) BS02 rna ? GO:0003735 ... G1SCJ6 35589706
    27 7toq:AL18 (3.1) BS01 rna N/A GO:0003735 ... N/A 35589706
    28 7toq:AL19 (3.1) BS01 rna ? GO:0003723 ... G1TYL6 35589706
    29 7toq:AL19 (3.1) BS02 rna ? GO:0003723 ... G1TYL6 35589706
    30 7toq:AL20 (3.1) BS01 rna N/A GO:0003735 ... N/A 35589706
    31 7toq:AL20 (3.1) BS02 rna N/A GO:0003735 ... N/A 35589706
    32 7toq:AL21 (3.1) BS01 rna ? GO:0003735 ... G1SHQ2 35589706
    33 7toq:AL21 (3.1) BS02 rna ? GO:0003735 ... G1SHQ2 35589706
    34 7toq:AL22 (3.1) BS01 rna N/A GO:0003735 ... N/A 35589706
    35 7toq:AL23 (3.1) BS01 rna ? GO:0000122 ... G1T6D1 35589706
    36 7toq:AL23 (3.1) BS02 rna ? GO:0000122 ... G1T6D1 35589706
    37 7toq:AL24 (3.1) BS01 rna ? N/A G1SE28 35589706
    38 7toq:AL25 (3.1) BS01 rna N/A GO:0003735 ... N/A 35589706
    39 7toq:AL25 (3.1) BS02 rna N/A GO:0003735 ... N/A 35589706
    40 7toq:AL26 (3.1) BS01 rna ? GO:0002181 ... G1SQH0 35589706
    41 7toq:AL26 (3.1) BS02 rna ? GO:0002181 ... G1SQH0 35589706
    42 7toq:AL27 (3.1) BS01 rna ? GO:0003735 ... G1TXF6 35589706
    43 7toq:AL28 (3.1) BS01 rna ? GO:0003735 ... G1SNY0 35589706
    44 7toq:AL29 (3.1) BS01 rna N/A GO:0003735 ... N/A 35589706
    45 7toq:AL30 (3.1) BS01 rna N/A GO:0003723 ... N/A 35589706
    46 7toq:AL31 (3.1) BS01 rna ? GO:0003735 ... G1SHG0 35589706
    47 7toq:AL32 (3.1) BS01 rna ? GO:0003735 ... G1TUN8 35589706
    48 7toq:AL33 (3.1) BS01 rna ? GO:0000049 ... G1SF08 35589706
    49 7toq:AL34 (3.1) BS01 rna ? GO:0003735 ... G1TXG5 35589706
    50 7toq:AL35 (3.1) BS01 rna ? GO:0000463 ... G1SIT5 35589706
    51 7toq:AL35 (3.1) BS02 rna ? GO:0000463 ... G1SIT5 35589706
    52 7toq:AL36 (3.1) BS01 rna ? GO:0002181 ... G1TTQ5 35589706
    53 7toq:AL37 (3.1) BS01 rna ? GO:0003735 ... U3KPD5 35589706
    54 7toq:AL37 (3.1) BS02 rna ? GO:0003735 ... U3KPD5 35589706
    55 7toq:AL37 (3.1) BS03 ZN ? GO:0003735 ... U3KPD5 35589706
    56 7toq:AL38 (3.1) BS01 rna N/A GO:0003735 ... N/A 35589706
    57 7toq:AL39 (3.1) BS01 rna N/A GO:0003735 ... N/A 35589706
    58 7toq:AL39 (3.1) BS02 rna N/A GO:0003735 ... N/A 35589706
    59 7toq:AL40 (3.1) BS01 rna N/A GO:0003735 ... N/A 35589706
    60 7toq:AL40 (3.1) BS02 ZN N/A GO:0003735 ... N/A 35589706
    61 7toq:AL42 (3.1) BS01 rna ? GO:0003735 ... A0A5F9D391 35589706
    62 7toq:AL42 (3.1) BS02 rna ? GO:0003735 ... A0A5F9D391 35589706
    63 7toq:AL42 (3.1) BS03 ZN ? GO:0003735 ... A0A5F9D391 35589706
    64 7toq:AL43 (3.1) BS01 rna ? GO:0003735 ... G1SY53 35589706
    65 7toq:AL43 (3.1) BS02 rna ? GO:0003735 ... G1SY53 35589706
    66 7toq:AL43 (3.1) BS03 ZN ? GO:0003735 ... G1SY53 35589706
    67 7toq:ARAC (3.1) BS01 rna ? GO:0001891 ... G1SJB4 35589706
    68 7toq:AS00 (3.1) BS01 rna ? GO:0003735 ... G1TJH8 35589706
    69 7toq:AS01 (3.1) BS01 rna ? GO:0003735 ... G1SS70 35589706
    70 7toq:AS01 (3.1) BS02 rna ? GO:0003735 ... G1SS70 35589706
    71 7toq:AS02 (3.1) BS01 rna N/A GO:0003723 ... N/A 35589706
    72 7toq:AS03 (3.1) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 35589706
    73 7toq:AS04 (3.1) BS01 rna ? GO:0003723 ... G1TA47 35589706
    74 7toq:AS05 (3.1) BS01 rna ? GO:0000028 ... G1TFM5 35589706
    75 7toq:AS06 (3.1) BS01 rna ? GO:0000082 ... G1TM55 35589706
    76 7toq:AS07 (3.1) BS01 rna N/A GO:0003735 ... N/A 35589706
    77 7toq:AS08 (3.1) BS01 rna ? GO:0000462 ... G1TJW1 35589706
    78 7toq:AS08 (3.1) BS02 rna ? GO:0000462 ... G1TJW1 35589706
    79 7toq:AS09 (3.1) BS01 rna ? GO:0003723 ... B7NZS8 35589706
    80 7toq:AS10 (3.1) BS01 rna ? N/A G1TPV3 35589706
    81 7toq:AS11 (3.1) BS01 rna ? GO:0003735 ... G1TRM4 35589706
    82 7toq:AS12 (3.1) BS01 rna ? GO:0003735 ... G1SFR8 35589706
    83 7toq:AS13 (3.1) BS01 rna ? GO:0003735 ... G1SP51 35589706
    84 7toq:AS14 (3.1) BS01 rna ? GO:0000028 ... G1T1F0 35589706
    85 7toq:AS15 (3.1) BS01 rna ? GO:0003723 ... G1U0Q2 35589706
    86 7toq:AS16 (3.1) BS01 rna N/A GO:0003735 ... N/A 35589706
    87 7toq:AS17 (3.1) BS01 rna ? GO:0003735 ... G1TU13 35589706
    88 7toq:AS18 (3.1) BS01 rna ? GO:0003676 ... G1TPG3 35589706
    89 7toq:AS19 (3.1) BS01 rna N/A GO:0003735 ... N/A 35589706
    90 7toq:AS20 (3.1) BS01 rna ? GO:0003723 ... G1SIZ2 35589706
    91 7toq:AS22 (3.1) BS01 rna ? GO:0003735 ... G1TG89 35589706
    92 7toq:AS23 (3.1) BS01 rna ? GO:0003735 ... G1SZ47 35589706
    93 7toq:AS24 (3.1) BS01 rna ? GO:0003735 ... G1T3D8 35589706
    94 7toq:AS25 (3.1) BS01 rna ? N/A G1TDB3 35589706
    95 7toq:AS26 (3.1) BS01 rna ? GO:0003735 ... G1TFE8 35589706
    96 7toq:AS27 (3.1) BS01 rna ? GO:0000028 ... G1TZ76 35589706
    97 7toq:AS28 (3.1) BS01 rna ? GO:0000028 ... G1TIB4 35589706
    98 7toq:AS29 (3.1) BS01 rna ? GO:0003735 ... G1U7M4 35589706
    99 7toq:AS30 (3.1) BS01 rna ? GO:0003735 ... G1T8A2 35589706
    100 7toq:AS31 (3.1) BS01 rna ? GO:0003735 ... G1SK22 35589706
    101 7toq:EL28 (3.1) BS01 rna ? GO:0003735 ... G1U7L1 35589706
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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