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BioLiP
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7top:AL02 (2.4) BS01 rna ? GO:0002181 ... P0CX45 35589706
    2 7top:AL03 (2.4) BS01 rna ? GO:0003735 ... N/A 35589706
    3 7top:AL04 (2.4) BS01 rna ? GO:0003735 ... N/A 35589706
    4 7top:AL04 (2.4) BS02 rna ? GO:0003735 ... N/A 35589706
    5 7top:AL05 (2.4) BS01 rna ? GO:0003735 ... N/A 35589706
    6 7top:AL05 (2.4) BS02 rna ? GO:0003735 ... N/A 35589706
    7 7top:AL06 (2.4) BS01 rna ? GO:0000027 ... Q02326 35589706
    8 7top:AL07 (2.4) BS01 rna ? GO:0000463 ... P05737 35589706
    9 7top:AL07 (2.4) BS02 rna ? GO:0000463 ... P05737 35589706
    10 7top:AL08 (2.4) BS01 rna ? GO:0000470 ... P17076 35589706
    11 7top:AL08 (2.4) BS02 rna ? GO:0000470 ... P17076 35589706
    12 7top:AL09 (2.4) BS01 rna ? GO:0002181 ... P05738 35589706
    13 7top:AL10 (2.4) BS01 rna ? GO:0003735 ... N/A 35589706
    14 7top:AL10 (2.4) BS02 rna ? GO:0003735 ... N/A 35589706
    15 7top:AL11 (2.4) BS01 rna ? GO:0003735 ... N/A 35589706
    16 7top:AL11 (2.4) BS02 rna ? GO:0003735 ... N/A 35589706
    17 7top:AL13 (2.4) BS01 rna ? GO:0002181 ... Q12690 35589706
    18 7top:AL13 (2.4) BS02 rna ? GO:0002181 ... Q12690 35589706
    19 7top:AL14 (2.4) BS01 rna ? GO:0000027 ... P36105 35589706
    20 7top:AL15 (2.4) BS01 rna ? GO:0002181 ... P05748 35589706
    21 7top:AL15 (2.4) BS02 rna ? GO:0002181 ... P05748 35589706
    22 7top:AL16 (2.4) BS01 rna ? GO:0000470 ... P26784 35589706
    23 7top:AL17 (2.4) BS01 rna ? GO:0000448 ... P05740 35589706
    24 7top:AL17 (2.4) BS02 rna ? GO:0000448 ... P05740 35589706
    25 7top:AL17 (2.4) BS03 peptide ? GO:0000448 ... P05740 35589706
    26 7top:AL18 (2.4) BS01 rna ? GO:0002181 ... P0CX49 35589706
    27 7top:AL19 (2.4) BS01 rna ? GO:0002181 ... P0CX82 35589706
    28 7top:AL20 (2.4) BS01 rna ? GO:0002181 ... P0CX23 35589706
    29 7top:AL20 (2.4) BS02 rna ? GO:0002181 ... P0CX23 35589706
    30 7top:AL21 (2.4) BS01 rna ? GO:0002181 ... Q02753 35589706
    31 7top:AL21 (2.4) BS02 rna ? GO:0002181 ... Q02753 35589706
    32 7top:AL22 (2.4) BS01 rna ? GO:0002181 ... P05749 35589706
    33 7top:AL23 (2.4) BS01 rna ? GO:0002181 ... P0CX41 35589706
    34 7top:AL24 (2.4) BS01 rna ? N/A N/A 35589706
    35 7top:AL25 (2.4) BS01 rna ? GO:0000027 ... P04456 35589706
    36 7top:AL25 (2.4) BS02 rna ? GO:0000027 ... P04456 35589706
    37 7top:AL26 (2.4) BS01 rna ? GO:0002181 ... P05743 35589706
    38 7top:AL26 (2.4) BS02 rna ? GO:0002181 ... P05743 35589706
    39 7top:AL27 (2.4) BS01 rna ? GO:0002181 ... P0C2H6 35589706
    40 7top:AL28 (2.4) BS01 rna ? GO:0002181 ... P02406 35589706
    41 7top:AL29 (2.4) BS01 rna ? GO:0003735 ... N/A 35589706
    42 7top:AL30 (2.4) BS01 rna ? GO:0002181 ... P14120 35589706
    43 7top:AL31 (2.4) BS01 rna ? GO:0002181 ... P0C2H8 35589706
    44 7top:AL32 (2.4) BS01 rna ? GO:0003735 ... N/A 35589706
    45 7top:AL33 (2.4) BS01 rna ? GO:0000027 ... P05744 35589706
    46 7top:AL34 (2.4) BS01 rna ? GO:0002181 ... P87262 35589706
    47 7top:AL35 (2.4) BS01 rna ? GO:0000463 ... P0CX84 35589706
    48 7top:AL35 (2.4) BS02 rna ? GO:0000463 ... P0CX84 35589706
    49 7top:AL36 (2.4) BS01 rna ? GO:0002181 ... P05745 35589706
    50 7top:AL37 (2.4) BS01 rna ? GO:0000448 ... P49166 35589706
    51 7top:AL37 (2.4) BS02 rna ? GO:0000448 ... P49166 35589706
    52 7top:AL37 (2.4) BS03 ZN ? GO:0000448 ... P49166 35589706
    53 7top:AL38 (2.4) BS01 rna ? GO:0003735 ... N/A 35589706
    54 7top:AL39 (2.4) BS01 rna ? GO:0002181 ... P04650 35589706
    55 7top:AL39 (2.4) BS02 rna ? GO:0002181 ... P04650 35589706
    56 7top:AL40 (2.4) BS01 rna ? GO:0000027 ... P0CH08 35589706
    57 7top:AL40 (2.4) BS02 ZN ? GO:0000027 ... P0CH08 35589706
    58 7top:AL42 (2.4) BS01 rna ? GO:0002181 ... P0CX27 35589706
    59 7top:AL42 (2.4) BS02 rna ? GO:0002181 ... P0CX27 35589706
    60 7top:AL42 (2.4) BS03 ZN ? GO:0002181 ... P0CX27 35589706
    61 7top:AL43 (2.4) BS01 rna ? GO:0002181 ... P0CX25 35589706
    62 7top:AL43 (2.4) BS02 ZN ? GO:0002181 ... P0CX25 35589706
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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