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BioLiP
Download all results in tab-seperated text for 44 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7syx:A (3.7) BS01 rna ? GO:0000049 ... P47813 35822879
    2 7syx:A (3.7) BS02 rna ? GO:0000049 ... P47813 35822879
    3 7syx:B (3.7) BS01 rna ? GO:0000028 ... G1TLT8 35822879
    4 7syx:C (3.7) BS01 rna ? GO:0003735 ... G1SS70 35822879
    5 7syx:C (3.7) BS02 rna ? GO:0003735 ... G1SS70 35822879
    6 7syx:D (3.7) BS01 rna ? GO:0003723 ... G1SV32 35822879
    7 7syx:D (3.7) BS02 rna ? GO:0003723 ... G1SV32 35822879
    8 7syx:E (3.7) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 35822879
    9 7syx:E (3.7) BS02 rna 4.2.99.18 GO:0003677 ... G1TNM3 35822879
    10 7syx:F (3.7) BS01 rna ? GO:0003723 ... G1TK17 35822879
    11 7syx:G (3.7) BS01 rna ? GO:0000028 ... G1TFM5 35822879
    12 7syx:H (3.7) BS01 rna ? GO:0003735 ... A0A5K1UJS7 35822879
    13 7syx:I (3.7) BS01 rna ? GO:0003735 ... G1SVB0 35822879
    14 7syx:J (3.7) BS01 rna ? GO:0000462 ... G1TJW1 35822879
    15 7syx:K (3.7) BS01 rna ? GO:0003723 ... B7NZS8 35822879
    16 7syx:L (3.7) BS01 rna ? GO:0003723 ... G1TPV3 35822879
    17 7syx:M (3.7) BS01 rna ? GO:0003735 ... G1TRM4 35822879
    18 7syx:N (3.7) BS01 rna ? GO:0003735 ... G1SFR8 35822879
    19 7syx:O (3.7) BS01 rna ? GO:0003735 ... G1SP51 35822879
    20 7syx:P (3.7) BS01 rna ? GO:0000028 ... G1T1F0 35822879
    21 7syx:Q (3.7) BS01 rna ? GO:0000028 ... G1U0Q2 35822879
    22 7syx:R (3.7) BS01 rna ? GO:0000462 ... G1SGX4 35822879
    23 7syx:S (3.7) BS01 rna ? GO:0003735 ... G1TU13 35822879
    24 7syx:T (3.7) BS01 rna ? GO:0003676 ... G1TPG3 35822879
    25 7syx:U (3.7) BS01 rna ? GO:0000028 ... G1TN62 35822879
    26 7syx:V (3.7) BS01 rna ? GO:0003723 ... G1SIZ2 35822879
    27 7syx:X (3.7) BS01 rna ? GO:0003735 ... G1TG89 35822879
    28 7syx:Y (3.7) BS01 rna ? GO:0003735 ... G1SZ47 35822879
    29 7syx:Z (3.7) BS01 rna ? GO:0003735 ... G1T3D8 35822879
    30 7syx:a (3.7) BS01 rna ? GO:0003735 ... G1TDB3 35822879
    31 7syx:b (3.7) BS01 rna ? GO:0003735 ... G1TFE8 35822879
    32 7syx:b (3.7) BS02 rna ? GO:0003735 ... G1TFE8 35822879
    33 7syx:b (3.7) BS03 ZN ? GO:0003735 ... G1TFE8 35822879
    34 7syx:c (3.7) BS01 rna ? GO:0000028 ... G1TZ76 35822879
    35 7syx:c (3.7) BS02 rna ? GO:0000028 ... G1TZ76 35822879
    36 7syx:d (3.7) BS01 rna ? GO:0000028 ... G1TIB4 35822879
    37 7syx:e (3.7) BS01 rna ? GO:0003735 ... G1U7M4 35822879
    38 7syx:f (3.7) BS01 rna ? GO:0003735 ... G1T8A2 35822879
    39 7syx:g (3.7) BS01 rna ? GO:0003735 ... G1SK22 35822879
    40 7syx:h (3.7) BS01 rna ? GO:0001891 ... G1SJB4 35822879
    41 7syx:x (3.7) BS01 rna ? GO:0003924 ... G1TRL5 35822879
    42 7syx:x (3.7) BS02 rna ? GO:0003924 ... G1TRL5 35822879
    43 7syx:x (3.7) BS03 MG ? GO:0003924 ... G1TRL5 35822879
    44 7syx:x (3.7) BS04 GTP ? GO:0003924 ... G1TRL5 35822879
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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